Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00123
         (596 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071415-1|AAL49037.1|  150|Drosophila melanogaster RE49852p pro...   125   5e-29
AE014296-445|AAF47639.1|  150|Drosophila melanogaster CG1320-PA ...   125   5e-29

>AY071415-1|AAL49037.1|  150|Drosophila melanogaster RE49852p
           protein.
          Length = 150

 Score =  125 bits (301), Expect = 5e-29
 Identities = 53/66 (80%), Positives = 60/66 (90%)
 Frame = +2

Query: 56  MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIY 235
           MSTRWYPIYQRGNPQLRVFLPNFWMKL+RP  +Q PN+V F  SMEMTKYD++NYLEKIY
Sbjct: 1   MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIY 60

Query: 236 EVPVVD 253
           ++PVVD
Sbjct: 61  KLPVVD 66



 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 40/80 (50%), Positives = 56/80 (70%)
 Frame = +1

Query: 256 RTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDES 435
           RT+I MG+ KKD   GY+ K+DDVK+A+VTLP+  +F +PD F +   ++ +  KSLDES
Sbjct: 68  RTRIAMGETKKDQTYGYITKKDDVKLAYVTLPREESFVFPDFFSEKAEKQAKEEKSLDES 127

Query: 436 KKNFRKYIDHNKSRPDIPSW 495
           K  FR+++D NK RP  P W
Sbjct: 128 KAGFRRFLDRNKKRPGTPGW 147


>AE014296-445|AAF47639.1|  150|Drosophila melanogaster CG1320-PA
           protein.
          Length = 150

 Score =  125 bits (301), Expect = 5e-29
 Identities = 53/66 (80%), Positives = 60/66 (90%)
 Frame = +2

Query: 56  MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIY 235
           MSTRWYPIYQRGNPQLRVFLPNFWMKL+RP  +Q PN+V F  SMEMTKYD++NYLEKIY
Sbjct: 1   MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIY 60

Query: 236 EVPVVD 253
           ++PVVD
Sbjct: 61  KLPVVD 66



 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 40/80 (50%), Positives = 56/80 (70%)
 Frame = +1

Query: 256 RTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDES 435
           RT+I MG+ KKD   GY+ K+DDVK+A+VTLP+  +F +PD F +   ++ +  KSLDES
Sbjct: 68  RTRIAMGETKKDQTYGYITKKDDVKLAYVTLPREESFVFPDFFSEKAEKQAKEEKSLDES 127

Query: 436 KKNFRKYIDHNKSRPDIPSW 495
           K  FR+++D NK RP  P W
Sbjct: 128 KAGFRRFLDRNKKRPGTPGW 147


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,786,744
Number of Sequences: 53049
Number of extensions: 396021
Number of successful extensions: 1139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)