Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00123
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical ...    63   2e-10
Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.8  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    28   5.8  
M37235-1|AAA28122.1|  273|Caenorhabditis elegans myosin II protein.    28   5.8  
AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical...    28   5.8  
Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical
           protein T08B2.8 protein.
          Length = 159

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
 Frame = +2

Query: 56  MSTRWYPIYQRGNPQLRVFLPNFWMKLVRPHP---KQLP-NIVHFHCSMEMTKYDIKNYL 223
           M++R   ++Q GNPQ RVFLP+FWM +V        +LP N V F     M+++DI+ YL
Sbjct: 1   MTSRLARLWQPGNPQRRVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYL 60

Query: 224 EKIYEVPVVD 253
            KIY++PV D
Sbjct: 61  TKIYDLPVRD 70



 Score = 34.7 bits (76), Expect = 0.051
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
 Frame = +1

Query: 256 RTKINMGKF----KKD-VVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAK 420
           RT++ MG      K D   K  + K++D K+A+V + K   F YP +FE ++ E+ E  K
Sbjct: 72  RTEVQMGDITWNSKLDHQYKKAMWKDEDKKIAYVFMSKGFEFSYPQMFE-ALEEDLELVK 130

Query: 421 SLDESKK 441
           ++ + ++
Sbjct: 131 AMKQQEE 137


>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 259 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSL 426
           TKIN+GK K  V   +  K++  K AF    ++  F+  + FEK +     + +S+
Sbjct: 33  TKINLGKVKTTVEAPFKNKKNRKKSAFPNKQRSRFFQTFNRFEKLLRGNYNYLRSI 88


>Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 13  NIVYYPLLNTSNFNNVHTVV 72
           N  +YPLLNTS+F+ +H+ V
Sbjct: 696 NAQHYPLLNTSSFDPIHSTV 715


>Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical
           protein T11A5.6 protein.
          Length = 718

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 13  NIVYYPLLNTSNFNNVHTVV 72
           N  +YPLLNTS+F+ +H+ V
Sbjct: 696 NAQHYPLLNTSSFDPIHSTV 715


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 253 WRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEH--AKSL 426
           W  K  +GK   D++K   +K   +K A   + K+ T        KS+N   E+     L
Sbjct: 39  WHAKHEVGKRIADIIKKKKLKIYKLKHAIKHIEKSQTHWL--TLAKSVNRNNENFFLNVL 96

Query: 427 DESKKNFRKYIDHN 468
             S+ N  K+  HN
Sbjct: 97  LASENNIEKFEHHN 110


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 253 WRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEH--AKSL 426
           W  K  +GK   D++K   +K   +K A   + K+ T        KS+N   E+     L
Sbjct: 39  WHAKHEVGKRIADIIKKKKLKIYKLKHAIKHIEKSQTHWL--TLAKSVNRNNENFFLNVL 96

Query: 427 DESKKNFRKYIDHN 468
             S+ N  K+  HN
Sbjct: 97  LASENNIEKFEHHN 110


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 343  TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 462
            T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 1621 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 1664


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 343  TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 462
            T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 1621 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 1664


>Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK1128.3 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 277 KFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKK 441
           K ++  ++G    +  V +  VT+PK + F+   L ++  + E  H    DE+++
Sbjct: 47  KNRRQRMEGLENVDQTVDLQLVTVPKVVPFRASRLLQEIYDRERVHGMRRDEARQ 101


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
            protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 343  TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 462
            T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 1621 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 1664


>M37235-1|AAA28122.1|  273|Caenorhabditis elegans myosin II protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 343 TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 462
           T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 121 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 164


>AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.44 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 283 KKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSL-DESKK 441
           +K V+     KE  V      LP+    K  D++EK+INE+ +  K   D+ KK
Sbjct: 100 EKSVILRKSRKECKVPSVVQALPEKYQKKISDIWEKNINEKVKKEKDCWDQQKK 153


>Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical
           protein T07F10.1b protein.
          Length = 976

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 25  YPLLNTSNFNNVHTVV 72
           YPLLN S  NN H +V
Sbjct: 546 YPLLNASRINNTHIIV 561


>Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical
           protein T07F10.1a protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 25  YPLLNTSNFNNVHTVV 72
           YPLLN S  NN H +V
Sbjct: 558 YPLLNASRINNTHIIV 573


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 PNIVHFHCSMEMTKYDIKNYLEKIYEVPV 247
           PN+ HFHCS+   + D+      +   PV
Sbjct: 290 PNLQHFHCSLPHDEIDLSQEFLALLNEPV 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,168
Number of Sequences: 27780
Number of extensions: 219588
Number of successful extensions: 666
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)