Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00123
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 30 1.0
At4g37280.1 68417.m05276 MRG family protein contains Pfam domain... 30 1.3
At5g43660.1 68418.m05336 expressed protein similar to unknown pr... 29 2.4
At2g34220.1 68415.m04187 hypothetical protein contains Pfam prof... 29 3.1
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 3.1
At5g63490.1 68418.m07970 CBS domain-containing protein / octicos... 28 5.4
At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein, chl... 28 5.4
At1g31350.1 68414.m03836 F-box family protein similar to hypothe... 27 7.2
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 27 9.5
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge... 27 9.5
At3g05390.1 68416.m00589 expressed protein ; expression supporte... 27 9.5
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 301 GYVIKEDDVKVAFVTLPKTMTFKY-PDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSR 477
G +++D K+ ++ L +++ + PD NE+ E +K +D+ K+ F D ++S+
Sbjct: 47 GKALEDDLHKIDYMILFESLLLRISPDADPNQSNEQTEQSKQIDDKKQEFCGIQDSSESK 106
>At4g37280.1 68417.m05276 MRG family protein contains Pfam domain
PF05712: MRG
Length = 320
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 367 KYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPS 492
K PDLF +N EEE + ++ +F K+I N+S +PS
Sbjct: 263 KLPDLFSY-VNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPS 303
>At5g43660.1 68418.m05336 expressed protein similar to unknown
protein (gb|AAB72163.1)
Length = 361
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 328 KVAFVTLPKTMTFKY--PDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSR 477
++ F P FK PD F+K + E E K L E+K RK +NKS+
Sbjct: 118 RIMFEPFPGVYVFKMFQPDFFQKLLVEVENMRKWLHEAKLMIRK--PNNKSK 167
>At2g34220.1 68415.m04187 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 718
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 310 IKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLD 429
+ DDVK + +TL K++ K+P + K + + + K +D
Sbjct: 627 VPNDDVKKSLLTLRKSLKEKFPLIDSKILQNKSTYEKLID 666
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 388 KSINEEEEHAKSLDESKKNFRKYIDHNKSRP 480
KS+N+EE H L+ +KK F +D ++ P
Sbjct: 1074 KSVNDEENHGLFLNRNKKKFTS-LDESRGMP 1103
>At5g63490.1 68418.m07970 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 543
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 373 PDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKS 474
PD F + + E+E+H K L S + + I+H KS
Sbjct: 443 PDNFPQILYEDEDHDKVLLASDSDLQAAIEHAKS 476
>At4g24930.1 68417.m03570 thylakoid lumenal 17.9 kDa protein,
chloroplast SP:Q9SW33;GI:17369630;PMID:11719511; similar
to expressed protein gi:12321169 {Oryza sativa}
Length = 225
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 262 KINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDE 432
++ G F +DV++ +++K+D V + T + + F S +EE K +D+
Sbjct: 158 EVEGGGFSRDVME-FLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQ 213
>At1g31350.1 68414.m03836 F-box family protein similar to
hypothetical protein GB:AAF24593 GI:6692128 from
[Arabidopsis thaliana] ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 395
Score = 27.5 bits (58), Expect = 7.2
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 250 GWRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLD 429
G+R K+ M K D VK I D VK + +P+ M + EEE S+D
Sbjct: 251 GYRRKLLMVNVKGDAVKEGAIY-DVVKDDWEPMPEEMLVGWRGPVAAM---EEEILYSVD 306
Query: 430 ESKKNFRKYIDHNK 471
E + RKY D +
Sbjct: 307 ERRGTVRKYDDEKR 320
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 208 H*KLFRKNL*STRCGWRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTM-TFKYPDLF 384
H + +K +T+C WR+K+ G+ +K +K + ++ A L K + +
Sbjct: 849 HYRKLKKAAITTQCAWRSKVARGELRK--LKMAARETGALQAAKNKLEKQVEELTWRLQL 906
Query: 385 EKSINEEEEHAKSLDESK 438
EK I + E AK + +K
Sbjct: 907 EKRIRTDLEEAKKQESAK 924
>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
(glycogenin)-related similar to glycogenin
glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
Oryctolagus cuniculus [GI:165513]; contains Pfam profile
PF01501: Glycosyl transferase family 8
Length = 593
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 241 TRCGWRTKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEE 411
TR +TKI M ++ + + + V + F + K FK+ DLF + I+EEEE
Sbjct: 100 TRGLGKTKIGMVNMEECDLTNWKRYGETVHIHFERVSKL--FKWQDLFPEWIDEEEE 154
>At3g05390.1 68416.m00589 expressed protein ; expression supported
by MPSS
Length = 463
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 367 KYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 480
K +L+EK ++ KS D SKK +K+++ +P
Sbjct: 79 KMDNLYEKLEKTVKDMEKSKDGSKKEMKKFLEDEVMKP 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,349
Number of Sequences: 28952
Number of extensions: 196388
Number of successful extensions: 483
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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