Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00122
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 120 2e-28
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 119 4e-28
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 106 3e-24
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 105 5e-24
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 102 5e-23
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 92 9e-20
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 64 2e-11
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 61 1e-10
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 56 6e-09
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 53 5e-08
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 50 4e-07
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 48 1e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 45 1e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 44 3e-05
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 42 1e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 41 2e-04
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 39 7e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.002
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 2.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.0
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 3.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 6.9
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 9.1
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 9.1
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 120 bits (290), Expect = 2e-28
Identities = 51/76 (67%), Positives = 63/76 (82%)
Frame = +2
Query: 254 KDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 433
+DYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DLRN
Sbjct: 65 EDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRN 124
Query: 434 DPATINELRKMKQEPV 481
DP TI EL K Q+P+
Sbjct: 125 DPKTIEELSKTSQKPI 140
Score = 119 bits (286), Expect = 5e-28
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +3
Query: 75 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 254
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 255 K 257
+
Sbjct: 65 E 65
Score = 49.6 bits (113), Expect = 5e-07
Identities = 28/50 (56%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Frame = +3
Query: 510 KINAFAYLECSAKSKEGVREVFETATRAAL-------QVKKKKKTRCSLL 638
KI A+ YLECSAK EGV EVFETA RA++ K KKK C LL
Sbjct: 151 KIGAYKYLECSAKLNEGVNEVFETAARASMLKFKPASVPKTKKKKHCILL 200
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 119 bits (287), Expect = 4e-28
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = +3
Query: 75 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 254
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 255 K 257
+
Sbjct: 65 E 65
Score = 116 bits (280), Expect = 3e-27
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 254 KDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 433
+DYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DLRN
Sbjct: 65 EDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRN 124
Query: 434 DPATINELRKMKQEPVKPQK 493
DP I EL K Q PV ++
Sbjct: 125 DPKIIEELSKTNQHPVTTEE 144
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 9/52 (17%)
Frame = +3
Query: 510 KINAFAYLECSAKSKEGVREVFETATRAAL-----QVK----KKKKTRCSLL 638
KI A+ YLECSAK+ EGVREVFE+ATRAA+ +VK KKK RC LL
Sbjct: 151 KIGAYKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSGTKKKKRCILL 202
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 106 bits (255), Expect = 3e-24
Identities = 45/76 (59%), Positives = 56/76 (73%)
Frame = +2
Query: 254 KDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 433
+DYDRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRD 121
Query: 434 DPATINELRKMKQEPV 481
DP+ +L + Q P+
Sbjct: 122 DPSVQQKLARQHQHPL 137
Score = 72.1 bits (169), Expect = 8e-14
Identities = 31/58 (53%), Positives = 42/58 (72%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQK 257
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQ+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQE 62
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Frame = +3
Query: 510 KINAFAYLECSAKSKEGVREVFETATRAALQ--VKKKKKTRCSLL 638
++ A Y+ECSA +++G++ VF+ A AAL V KKK++C +L
Sbjct: 148 ELGAVKYVECSALTQKGLKNVFDEAIVAALDPPVPHKKKSKCLVL 192
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 105 bits (253), Expect = 5e-24
Identities = 47/81 (58%), Positives = 58/81 (71%)
Frame = +2
Query: 254 KDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 433
++YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP PI+LVG K DLR
Sbjct: 75 EEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRK 134
Query: 434 DPATINELRKMKQEPVKPQKA 496
D LR PV Q+A
Sbjct: 135 DRNATEVLRTQGLTPVTYQQA 155
Score = 98.3 bits (234), Expect = 1e-21
Identities = 46/71 (64%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Frame = +3
Query: 51 ESSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQV 224
+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI + K +
Sbjct: 5 KKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVI 64
Query: 225 ELALWDTAGQK 257
ELALWDTAGQ+
Sbjct: 65 ELALWDTAGQE 75
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 528 YLECSAKSKEGVREVFETATRAALQVKKK---KKTRCSLL 638
Y+ECSAK GV EVF+ A L +KK K C +L
Sbjct: 166 YVECSAKENTGVNEVFQLA--VGLTIKKSFSFSKKSCVIL 203
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 102 bits (245), Expect = 5e-23
Identities = 45/83 (54%), Positives = 59/83 (71%)
Frame = +2
Query: 254 KDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 433
++Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DLR+
Sbjct: 67 EEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRS 126
Query: 434 DPATINELRKMKQEPVKPQKAGL 502
DP I E+R+ Q VK Q+A L
Sbjct: 127 DPVAIEEMRRRNQNFVKSQQAEL 149
Score = 99 bits (238), Expect = 3e-22
Identities = 45/61 (73%), Positives = 51/61 (83%)
Frame = +3
Query: 75 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 254
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQ
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 255 K 257
+
Sbjct: 67 E 67
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Frame = +3
Query: 510 KINAFAYLECSAKSKEGVREVFETATRAALQVK----KKKKTRCSLL 638
+I A Y+ECS+ + +GV +VFE ATRAAL V+ K T+C ++
Sbjct: 153 RIGARKYMECSSLTGDGVDDVFEAATRAALTVRDSENDKSSTKCCII 199
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 91.9 bits (218), Expect = 9e-20
Identities = 40/61 (65%), Positives = 50/61 (81%)
Frame = +3
Query: 75 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 254
I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +EL+LWDTAGQ
Sbjct: 12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQ 71
Query: 255 K 257
+
Sbjct: 72 E 72
Score = 78.6 bits (185), Expect = 9e-16
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 254 KDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 430
++YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV CP V ++LV K DLR
Sbjct: 72 EEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLR 130
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +3
Query: 510 KINAFAYLECSAKSKEGVREVFETATRAALQVKKK 614
KINA YLECSAK GV E F A R AL + +
Sbjct: 154 KINAVRYLECSAKLNRGVNEAFTEAARVALAAQPR 188
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 64.1 bits (149), Expect = 2e-11
Identities = 26/59 (44%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQK 257
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQ+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 61.3 bits (142), Expect = 1e-10
Identities = 25/59 (42%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQK 257
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQ+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 56.0 bits (129), Expect = 6e-09
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQK 257
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQ+
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 528 YLECSAKSKEGVREVFETATRAALQ 602
+ E SAK V ++FET +R AL+
Sbjct: 154 HFEASAKENTNVTDLFETVSRLALE 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.8 bits (121), Expect = 5e-08
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQK 257
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQ+
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +3
Query: 66 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-GKQVELALW 239
+ I +KLV++GD A GK+ L++ F KDQF + T+ ++ + +D V+L +W
Sbjct: 10 VVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIW 69
Query: 240 DTAGQK 257
DTAGQ+
Sbjct: 70 DTAGQE 75
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +3
Query: 72 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 245
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 246 AGQK 257
AGQ+
Sbjct: 68 AGQE 71
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQK 257
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQ+
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 528 YLECSAKSKEGVREVFETATRAALQ 602
Y E SAK V+E FET + AL+
Sbjct: 153 YFETSAKEAINVQEAFETVAKLALE 177
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQK 257
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQ+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 242
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 243 TAGQ 254
TAGQ
Sbjct: 61 TAGQ 64
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 LMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDPATINE 454
++ +S+ S S E + + H VPI++VGNK DL A E
Sbjct: 82 VLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAE 132
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 41.1 bits (92), Expect = 2e-04
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 248
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 249 GQK 257
GQ+
Sbjct: 71 GQE 73
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQK 257
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ+
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQK 257
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQ+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 305 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 430
++ F V S + +N+P W V+ C N+PI+L GNK D++
Sbjct: 86 IIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -2
Query: 247 AVSHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 125
A S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 305 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 433
++C S E + W P + NVPI+L NK +DL N
Sbjct: 77 VICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 245 GIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 135
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 48 PESSGPMAAIRKK--LVIVGDGACGKTCLL 131
P + I KK ++VGD A GKTC+L
Sbjct: 1857 PVLESVITCINKKWPCILVGDTATGKTCIL 1886
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 133 ISRHVLPHAPSPTITNFLRIAAIGPED 53
I H+LP+ TITNF R+ G D
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPGFTD 214
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 332 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 430
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 66 MAAIRKKLVIVGDGACGKT-CLLIVFSKDQFPEVYVPTVFENYVADIEV 209
M K L I+G G T C +FS++ + ++ E ++ DIEV
Sbjct: 214 MHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,238
Number of Sequences: 5004
Number of extensions: 66153
Number of successful extensions: 266
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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