Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00121
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.4  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   3.4  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 306 RSRSAFSLSNTQAYLKDLYPFPGPPS 229
           R R+   LS+    +  L P PGPPS
Sbjct: 100 RQRTDDWLSSPSGNVPPLTPSPGPPS 125


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 278 LDKLKAERERGITIDIALWKFETSKYYVTII 370
           L KLK   + G  + +A  KF   K+YV I+
Sbjct: 78  LKKLKFLLKLGQLLGLAPVKFYVQKFYVVIL 108


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 278 LDKLKAERERGITIDIALWKFETSKYYVTII 370
           L KLK   + G  + +A  KF   K+YV I+
Sbjct: 4   LKKLKFLLKLGQLLGLAPVKFYVQKFYVVIL 34


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 669  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 541
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 669  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 541
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 71  FHFFTSQNNFFDTHH 27
           FH  T+ N F   HH
Sbjct: 137 FHIATTSNEFIRVHH 151


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 56  SQNNFFDTHHGLQT 15
           S  NFF   HGL+T
Sbjct: 175 SAANFFGARHGLET 188


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 700 CCLRAIQKWARKRQQLGCSQSS*CMRIL 617
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 700 CCLRAIQKWARKRQQLGCSQSS*CMRIL 617
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,556
Number of Sequences: 336
Number of extensions: 3894
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)