Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00120
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 106 2e-24
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 106 2e-24
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 106 2e-24
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 0.26
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 29 0.46
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.81
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 25 7.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.5
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 24 9.9
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 9.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 106 bits (254), Expect = 2e-24
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
GTI+ N+EEK GD L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 109 GTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIV 168
Query: 433 AGGGRIDKPI 462
AGGGRIDKP+
Sbjct: 169 AGGGRIDKPL 178
Score = 84.2 bits (199), Expect = 9e-18
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +3
Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
A +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A E
Sbjct: 25 AAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATE 79
Score = 54.8 bits (126), Expect = 6e-09
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +2
Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283
+ +YTGQFVYCGK A L VGNV+PVG MPE + + ++ K
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 106 bits (254), Expect = 2e-24
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
GTI+ N+EEK GD L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 109 GTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIV 168
Query: 433 AGGGRIDKPI 462
AGGGRIDKP+
Sbjct: 169 AGGGRIDKPL 178
Score = 84.2 bits (199), Expect = 9e-18
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +3
Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
A +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A E
Sbjct: 25 AAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATE 79
Score = 54.8 bits (126), Expect = 6e-09
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +2
Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283
+ +YTGQFVYCGK A L VGNV+PVG MPE + + ++ K
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 106 bits (254), Expect = 2e-24
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
GTI+ N+EEK GD L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 109 GTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIV 168
Query: 433 AGGGRIDKPI 462
AGGGRIDKP+
Sbjct: 169 AGGGRIDKPL 178
Score = 84.2 bits (199), Expect = 9e-18
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +3
Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
A +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A E
Sbjct: 25 AAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATE 79
Score = 54.8 bits (126), Expect = 6e-09
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +2
Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283
+ +YTGQFVYCGK A L VGNV+PVG MPE + + ++ K
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEK 118
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 0.26
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 437 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRLLSPIFSSRL 267
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 28.7 bits (61), Expect = 0.46
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -2
Query: 304 PDDXYHPFSLQDCTQWYLRHGSNRHHISNFKSCXLSTINKLACVEASGAMKSSFLVLN-- 131
P+D + C L S HH+ +ST L ++ K+ F+VLN
Sbjct: 219 PEDCINSLEGFSCAM--LNTSSESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNA 276
Query: 130 LYGSRKCTTAKG 95
+Y S K + +G
Sbjct: 277 VYDSEKISFPEG 288
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 0.81
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 380 DGSFTLVRLASGLCPITVAKFPEARARRLLSPIFSSRLHTMVPQAWLQQ-ASHFQLQELX 204
DG+F LV G+C T+ +A R+ + +++ ++ + L +H+ L L
Sbjct: 119 DGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLV 178
Query: 203 SFHNKQIG 180
N IG
Sbjct: 179 EQVNAVIG 186
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 311 ARARRLLSPIFSSRLHTMVPQAWLQQASHF 222
A A L P F+ LHT +++ SHF
Sbjct: 548 AHAMELRDPEFADYLHTWEGTTFIEDESHF 577
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 7.5
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -1
Query: 437 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRLLSPIFSSRLHTM 258
P + + L L + + L+ L S L + K RLLSPIF+ L +
Sbjct: 1196 PGILGHLVLELSNHNSVVRSSTQKLLSLLSELSNTPIVKLVSPFKERLLSPIFAKPLRAL 1255
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 416 PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 318
PLLLD + S +V +ASG+ P+ KF
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 116 PRSIQVQDKEGALHCSR 166
PRSI V ++G L C+R
Sbjct: 180 PRSILVDSEDGVLRCAR 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,866
Number of Sequences: 5004
Number of extensions: 43134
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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