Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00120
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 96 1e-20
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 1.4
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 4.3
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829... 27 5.6
06_03_0806 + 24788441-24789049 27 7.4
04_04_1191 + 31599067-31600194 27 7.4
02_05_1163 + 34615591-34615678,34615866-34616202,34616419-346165... 27 7.4
04_03_0142 + 11773124-11774158 27 9.8
03_03_0177 + 15140414-15140777,15142067-15142239 27 9.8
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 27 9.8
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 95.9 bits (228), Expect = 1e-20
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
G +VCN+E +GD ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G V
Sbjct: 110 GAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQV 169
Query: 433 AGGGRIDKPI 462
AGGGR +KP+
Sbjct: 170 AGGGRTEKPM 179
Score = 84.2 bits (199), Expect = 5e-17
Identities = 36/53 (67%), Positives = 45/53 (84%)
Frame = +3
Query: 9 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
+ RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A E
Sbjct: 28 RFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAE 80
Score = 50.4 bits (115), Expect = 7e-07
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = +2
Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPE 253
+ +YTGQFVYCG+ ATL +GNV+P+ ++PE
Sbjct: 79 AEGMYTGQFVYCGRRATLSIGNVLPIRSVPE 109
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 312 LWKLRHCDWT 341
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 343 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 462
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>03_06_0331 -
33181757-33181795,33182325-33182453,33182941-33182967,
33183459-33183545,33183827-33183975,33185467-33185521,
33185596-33187584,33188705-33188782
Length = 850
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 221 QLQELXSFHNKQIGLCRGFGSNEELLPCLELV 126
++ E SFH K IG C F +++E+ C ++
Sbjct: 799 KMDEAGSFHIKNIGKCSIFVNSKEVPSCKRII 830
>06_03_0806 + 24788441-24789049
Length = 202
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 389 LAPDGSFTLVRLASGLCPITVAKFPEARARRL 294
+A DGS T V A+ CP++V+ A RL
Sbjct: 29 IAADGSLTEVAAAAASCPVSVSDVLGGNAGRL 60
>04_04_1191 + 31599067-31600194
Length = 375
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 140 KEGALHCSRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRKWVIXVVWHVPLE 319
+EGAL SL + + C K L V M VG +P C + + VW + L+
Sbjct: 65 EEGALRGYTSLKSIKVQGCPKLIPLLVSGKMEVGLLPPSLECLCIDMGPELSTVWDLKLQ 124
>02_05_1163 +
34615591-34615678,34615866-34616202,34616419-34616582,
34616706-34616871,34617255-34617357,34617453-34617578,
34617718-34617807,34618030-34618308
Length = 450
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 88 EVHLWLLYTSAIHTSSRQGRSSSLLPKPLHRPICLLWKEXN 210
++HL+ +++ + T+S + SS +P+P H C L E N
Sbjct: 59 KMHLYNAWSTLLDTTSDEVMKSSDVPRPPHLENCRLKWERN 99
>04_03_0142 + 11773124-11774158
Length = 344
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 392 FLAPDGSFTLVRLASGLCPITVAKFP 315
FLA G+F +V LASGL P+ V P
Sbjct: 66 FLAWLGAFKVVLLASGLGPLAVDGLP 91
>03_03_0177 + 15140414-15140777,15142067-15142239
Length = 178
Score = 26.6 bits (56), Expect = 9.8
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = -2
Query: 286 PFSLQDCTQWYLRHGSNRHHISNFKSCXLSTINKLACVEASGAMKSSFLVLNLYGSRKCT 107
P DCT L+ +++ K+ S +KL C E GA+K S V L +
Sbjct: 34 PAPAVDCTAEALKLADCLDYVTPGKTAP-SRPSKLCCGEVKGALKDSAAVGCLCAA---F 89
Query: 106 TAKGAPLPGSWIISLTTPLMYP 41
T+K PLP I++T L P
Sbjct: 90 TSKTLPLP----INITRALHLP 107
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = -2
Query: 343 CVQSQWRSFQRHVPDDXYHPFSLQDCTQWY 254
C W++ H+P H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,347
Number of Sequences: 37544
Number of extensions: 309967
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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