Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00120
         (464 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   7e-26
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)        86   1e-17
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    33   0.12 
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   31   0.47 
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.1  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.9  
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_39313| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_31592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              27   5.8  
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    27   7.7  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           27   7.7  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  113 bits (272), Expect = 7e-26
 Identities = 52/70 (74%), Positives = 60/70 (85%)
 Frame = +1

Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
           GTI+ ++EEK GD  RLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIV
Sbjct: 110 GTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIV 169

Query: 433 AGGGRIDKPI 462
           AGGGRIDKP+
Sbjct: 170 AGGGRIDKPM 179



 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 44/55 (80%), Positives = 48/55 (87%)
 Frame = +3

Query: 3   APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
           A  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A E
Sbjct: 26  AANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATE 80



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +2

Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283
           +  +YTGQF+YCGK A L++GN +PVG MPE  + + ++ K
Sbjct: 79  TEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEK 119


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = +1

Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 420
           GTI+ ++EEK GD  RLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +
Sbjct: 68  GTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123



 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 31/38 (81%), Positives = 35/38 (92%)
 Frame = +3

Query: 54  GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A E
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATE 38



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +2

Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283
           +  +YTGQF+YCGK A L++GN +PVG MPE  + + ++ K
Sbjct: 37  TEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEK 77


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = +1

Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
           GT+V N+E   G  ++LARA+G  A +I    +     V+LPS  +K + S     VG V
Sbjct: 126 GTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVGRV 183

Query: 433 AGGGRIDKPI 462
           +   R ++ I
Sbjct: 184 SNIERKNRVI 193


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 440 PPATIPTMPLLLDGRTFLAPDGSFT 366
           P AT   + L+LD  TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 369  YSCTLSIRIVSNHSGEVSRGTCQTTX-ITHFLFKIAHNGTSGMAPT 235
            +S  + IR V   + E S      T  ITH L+ +AHNG + + PT
Sbjct: 1041 FSLQVDIRSVIAFAPEASLPYLSGTHTITHNLYNLAHNGKNNLLPT 1086


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 301  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 429
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -1

Query: 449 IRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRLLSP 285
           +RP P T PTM  +LD   F  P   +   RL    C     +F    +  LL P
Sbjct: 272 LRPDPTTRPTMQQVLDD-DFFKPSSGYMPTRLPVS-CLTMPPRFATGSSSNLLQP 324


>SB_39313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 307 VPDDXYHPFSLQDCTQWYLRHGSNRH 230
           VP+     F   D  +WY  HGSN H
Sbjct: 108 VPEKGQARFKPADLAKWYSLHGSNEH 133


>SB_31592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 223 SNFKSCXLSTINKLAC--VEASGAMKSSFLVLNLYGSRKCTTAKGAPL 86
           S  + C  +   KLAC  V++ G+ +++   L+ YG   C T   A L
Sbjct: 201 SQSRRCKTTASAKLACLQVDSRGSPRNNIAWLSFYGENNCQTKDFAVL 248


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 132 TCMDRGSVQQPKVHLYQGHGLY 67
           T  D G +Q P  HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 443 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 312
           PPP  IP + + + GR+F+    +  +V   SG  P+T+ K  E
Sbjct: 361 PPPIDIPNLMIPIRGRSFV----NDKIVEEKSGDSPLTIKKTSE 400


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 98  FGCCTLPRSIQVQDK 142
           FGCC +P ++  QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196


>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 369 YSCTLSIRIVSNHSGEVSRG 310
           Y+CTL+I +   H GE+ RG
Sbjct: 11  YACTLNINVGVKHPGEMFRG 30


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 380 DGSFTLVRLASGLCPITVAKFPEARARRLLSPIFSSRLHTMVPQAWLQQASHFQ 219
           DG+  +V   SG+C  T     +A A R+   +F +++   + +  L Q   +Q
Sbjct: 124 DGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQ 177


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 464 KIGLS-IRPPPATI--PTMPLLLDGRTFLAPDGSFT 366
           ++GLS I+PPP  +  PT+P +  G     P GS T
Sbjct: 237 RLGLSNIKPPPPPVPPPTIPSVPPGSETYVPPGSAT 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,500
Number of Sequences: 59808
Number of extensions: 345772
Number of successful extensions: 912
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)