BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00120 (464 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 117 2e-26 CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 117 2e-26 BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 117 2e-26 BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 117 2e-26 BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 117 2e-26 BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 117 2e-26 BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 117 2e-26 BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 117 2e-26 AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 117 2e-26 AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 97 3e-20 BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,... 32 1.1 AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor ... 32 1.1 Z80345-1|CAB02492.1| 412|Homo sapiens acyl-CoA dehydrogenase pr... 29 6.0 U83992-1|AAD00552.1| 412|Homo sapiens short chain acyl CoA dehy... 29 6.0 M26393-1|AAA60307.1| 412|Homo sapiens ACADS protein. 29 6.0 BC025963-1|AAH25963.1| 412|Homo sapiens acyl-Coenzyme A dehydro... 29 6.0 >Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.4 bits (125), Expect = 2e-07 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L +GNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119 >CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.4 bits (125), Expect = 2e-07 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L +GNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119 >BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.8 bits (126), Expect = 1e-07 Identities = 23/41 (56%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L VGNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119 >BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.4 bits (125), Expect = 2e-07 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L +GNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119 >BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.8 bits (126), Expect = 1e-07 Identities = 23/41 (56%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L VGNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119 >BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.8 bits (126), Expect = 1e-07 Identities = 23/41 (56%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L VGNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119 >BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.4 bits (125), Expect = 2e-07 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L +GNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119 >BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. Length = 211 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 64 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 123 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 124 AGGGRIDKPI 133 Score = 62.1 bits (144), Expect = 9e-10 Identities = 28/34 (82%), Positives = 29/34 (85%) Frame = +3 Query: 66 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 DIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 1 DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 34 Score = 54.4 bits (125), Expect = 2e-07 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L +GNV+PVG MPE + L+ K Sbjct: 33 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 73 >AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 117 bits (281), Expect = 2e-26 Identities = 53/70 (75%), Positives = 62/70 (88%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432 GTIVC LEEK GD +LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG+V Sbjct: 110 GTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVV 169 Query: 433 AGGGRIDKPI 462 AGGGRIDKPI Sbjct: 170 AGGGRIDKPI 179 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 26 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 80 Score = 54.4 bits (125), Expect = 2e-07 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L +GNV+PVG MPE + L+ K Sbjct: 79 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119 >AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 protein. Length = 130 Score = 97.1 bits (231), Expect = 3e-20 Identities = 43/55 (78%), Positives = 49/55 (89%) Frame = +3 Query: 3 APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167 A +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA E Sbjct: 22 AARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAE 76 Score = 54.4 bits (125), Expect = 2e-07 Identities = 22/41 (53%), Positives = 29/41 (70%) Frame = +2 Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPEVPLCAILKRK 283 + ++TGQFVYCGK A L +GNV+PVG MPE + L+ K Sbjct: 75 AEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 115 Score = 42.3 bits (95), Expect = 8e-04 Identities = 19/25 (76%), Positives = 21/25 (84%) Frame = +1 Query: 253 GTIVCNLEEKMGDXSRLARASGNFA 327 GTIVC LEEK GD +LARASGN+A Sbjct: 106 GTIVCCLEEKPGDRGKLARASGNYA 130 >BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor, alpha protein. Length = 457 Score = 31.9 bits (69), Expect = 1.1 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -2 Query: 175 VEASGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 50 VE G + FLV++ Y +R C KG P PG + L TPL Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48 >AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor alpha 2 isoform protein. Length = 54 Score = 31.9 bits (69), Expect = 1.1 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -2 Query: 175 VEASGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 50 VE G + FLV++ Y +R C KG P PG + L TPL Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48 >Z80345-1|CAB02492.1| 412|Homo sapiens acyl-CoA dehydrogenase protein. Length = 412 Score = 29.5 bits (63), Expect = 6.0 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 305 ARRLLSPIFSSRLHTMVPQAWLQQASHFQLQELXSFHNKQIGLCRGFGSNEELLP 141 A LL+ + P+AW Q + +Q EL H + CR F + +EL P Sbjct: 2 AAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQTCRDF-AEKELFP 55 >U83992-1|AAD00552.1| 412|Homo sapiens short chain acyl CoA dehydrogenase protein. Length = 412 Score = 29.5 bits (63), Expect = 6.0 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 305 ARRLLSPIFSSRLHTMVPQAWLQQASHFQLQELXSFHNKQIGLCRGFGSNEELLP 141 A LL+ + P+AW Q + +Q EL H + CR F + +EL P Sbjct: 2 AAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQTCRDF-AEKELFP 55 >M26393-1|AAA60307.1| 412|Homo sapiens ACADS protein. Length = 412 Score = 29.5 bits (63), Expect = 6.0 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 305 ARRLLSPIFSSRLHTMVPQAWLQQASHFQLQELXSFHNKQIGLCRGFGSNEELLP 141 A LL+ + P+AW Q + +Q EL H + CR F + +EL P Sbjct: 2 AAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQTCRDF-AEKELFP 55 >BC025963-1|AAH25963.1| 412|Homo sapiens acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain protein. Length = 412 Score = 29.5 bits (63), Expect = 6.0 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 305 ARRLLSPIFSSRLHTMVPQAWLQQASHFQLQELXSFHNKQIGLCRGFGSNEELLP 141 A LL+ + P+AW Q + +Q EL H + CR F + +EL P Sbjct: 2 AAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQTCRDF-AEKELFP 55 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 78,305,419 Number of Sequences: 237096 Number of extensions: 1745113 Number of successful extensions: 4179 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4179 length of database: 76,859,062 effective HSP length: 84 effective length of database: 56,942,998 effective search space used: 3986009860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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