Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00120
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   110   5e-25
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   2.9  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   2.9  
X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.        27   5.0  
AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and gl...    27   5.0  
U13070-9|AAU05578.1|  388|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U13070-8|AAN84828.1|  433|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AB079783-1|BAB84821.1|  433|Caenorhabditis elegans endo-beta-N-a...    27   6.6  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  110 bits (264), Expect = 5e-25
 Identities = 47/70 (67%), Positives = 58/70 (82%)
 Frame = +1

Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
           GT +CN+E K GD   +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+V
Sbjct: 110 GTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLV 169

Query: 433 AGGGRIDKPI 462
           AGGGR DKP+
Sbjct: 170 AGGGRTDKPL 179



 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +3

Query: 3   APKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
           A KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+KT K   +A E
Sbjct: 26  ASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAE 80



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 14/31 (45%), Positives = 25/31 (80%)
 Frame = +2

Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPE 253
           +  ++TGQF++CG  A +++GN++PVG +PE
Sbjct: 79  AEGMHTGQFIHCGAKAQIQIGNIVPVGTLPE 109


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  HGYIKGVVKDIIHDPGRGAPLAVVHFR 119
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  HGYIKGVVKDIIHDPGRGAPLAVVHFR 119
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 334 IGHNPDAKRTRVKLPSGAKKVL 399
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 81  PGRGAPLAVVHFRDPYKFKTRKELFIAPEAS-TQANLFIVE 200
           P R   LA     +PYK    K + I PEAS  Q  +F +E
Sbjct: 313 PMRQQALARGQVPEPYKMPETKSMLIDPEASEAQKKVFTIE 353


>AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein2 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 81  PGRGAPLAVVHFRDPYKFKTRKELFIAPEAS-TQANLFIVE 200
           P R   LA     +PYK    K + I PEAS  Q  +F +E
Sbjct: 313 PMRQQALARGQVPEPYKMPETKSMLIDPEASEAQKKVFTIE 353


>U13070-9|AAU05578.1|  388|Caenorhabditis elegans Hypothetical
           protein F01F1.10c protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
 Frame = -1

Query: 317 PEARARRLLSPIFSSRLHTMVPQAWLQQASHFQLQE--LXSFHNKQI---GLCRGFGSNE 153
           P  R R L S  F +   T + Q W  + S  QLQ   L SF ++ I   GL   FG N 
Sbjct: 256 PHIRTRPLTSINFGTNFCTGMDQNWHYRLSTVQLQPQILSSFCHQVIDSTGLTL-FGRNR 314

Query: 152 E-LLPCLELVWIAEVYNSQRCTSTRVMDYILNNS 54
           + LL   + V  + +  +  CT++  +D +LN S
Sbjct: 315 KFLLFTFDSVNYSTL--TITCTTSNSIDLLLNRS 346


>U13070-8|AAN84828.1|  433|Caenorhabditis elegans Hypothetical
           protein F01F1.10b protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
 Frame = -1

Query: 317 PEARARRLLSPIFSSRLHTMVPQAWLQQASHFQLQE--LXSFHNKQI---GLCRGFGSNE 153
           P  R R L S  F +   T + Q W  + S  QLQ   L SF ++ I   GL   FG N 
Sbjct: 301 PHIRTRPLTSINFGTNFCTGMDQNWHYRLSTVQLQPQILSSFCHQVIDSTGLTL-FGRNR 359

Query: 152 E-LLPCLELVWIAEVYNSQRCTSTRVMDYILNNS 54
           + LL   + V  + +  +  CT++  +D +LN S
Sbjct: 360 KFLLFTFDSVNYSTL--TITCTTSNSIDLLLNRS 391


>AB079783-1|BAB84821.1|  433|Caenorhabditis elegans
           endo-beta-N-acetylglucosaminidase protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
 Frame = -1

Query: 317 PEARARRLLSPIFSSRLHTMVPQAWLQQASHFQLQE--LXSFHNKQI---GLCRGFGSNE 153
           P  R R L S  F +   T + Q W  + S  QLQ   L SF ++ I   GL   FG N 
Sbjct: 301 PHIRTRPLTSINFGTNFCTGMDQNWHYRLSTVQLQPQILSSFCHQVIDSTGLTL-FGRNR 359

Query: 152 E-LLPCLELVWIAEVYNSQRCTSTRVMDYILNNS 54
           + LL   + V  + +  +  CT++  +D +LN S
Sbjct: 360 KFLLFTFDSVNYSTL--TITCTTSNSIDLLLNRS 391


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 39  HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEASTQAN 185
           HG    +V  ++H P R A L ++  +   K  T  ++F+  +   Q +
Sbjct: 285 HGLFSTIVMLVVHKPYRQATLQILKIKRIEKIGTANKVFLVFQEKKQVS 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,769
Number of Sequences: 27780
Number of extensions: 251631
Number of successful extensions: 744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)