Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00120
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.23 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.53 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.53 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.6  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 113 LPRSIQVQDKEGALHCSRSLYTGQFVYCGK 202
           L +S++  DKE  L     LY  +F Y GK
Sbjct: 508 LNKSLKYSDKERDLSLRMILYFSEFAYLGK 537


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 291 ITHFLFKIAHNGTSGMAPTGITFPTSRVAFF 199
           + HF F + HN    M    + FP  R  F+
Sbjct: 228 LNHFYFMLNHNYPPFMLSNSLNFPQIRGEFY 258


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 291 ITHFLFKIAHNGTSGMAPTGITFPTSRVAFF 199
           + HF F + HN    M    + FP  R  F+
Sbjct: 228 LNHFYFMLNHNYPPFMLSNSLNFPQIRGEFY 258


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 334 IGHNPDAKRTRVKLPSGAKKVL 399
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 446 RPPPATIPTMPLLLDGRTFLA 384
           +P P     +P++++GR  +A
Sbjct: 218 KPTPVQKHALPIIMNGRDLMA 238


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 353 ASGLCPITVAKFPEARA 303
           AS  C +   K+P+ARA
Sbjct: 624 ASSYCGLRDRKYPDARA 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,343
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)