Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00120
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 98 3e-21
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 97 4e-21
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 93 8e-20
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 39 0.001
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 39 0.001
At3g55660.1 68416.m06184 expressed protein contains Pfam profile... 28 2.7
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 28 3.6
At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 27 6.2
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 6.2
At1g44130.1 68414.m05097 nucellin protein, putative similar to n... 27 6.2
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 27 8.3
At2g26420.1 68415.m03170 1-phosphatidylinositol-4-phosphate 5-ki... 27 8.3
At1g77480.2 68414.m09023 nucellin protein, putative similar to n... 27 8.3
At1g77480.1 68414.m09022 nucellin protein, putative similar to n... 27 8.3
At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi... 27 8.3
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 97.9 bits (233), Expect = 3e-21
Identities = 42/70 (60%), Positives = 55/70 (78%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
G +VCN+E +GD LARASG++A VI HNPD+ TR+KLPSG+KK++PS R M+G V
Sbjct: 110 GAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQV 169
Query: 433 AGGGRIDKPI 462
AGGGR +KP+
Sbjct: 170 AGGGRTEKPM 179
Score = 85.0 bits (201), Expect = 2e-17
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +3
Query: 9 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+A E
Sbjct: 28 KFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAE 80
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2
Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPE 253
+ +YTGQF+YCGK ATL VGNV+P+ ++PE
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPE 109
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/69 (60%), Positives = 55/69 (79%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
G ++CN+E +GD LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ R M+G V
Sbjct: 111 GAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQV 170
Query: 433 AGGGRIDKP 459
AGGGR +KP
Sbjct: 171 AGGGRTEKP 179
Score = 81.8 bits (193), Expect = 2e-16
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +3
Query: 9 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
K RSLDY ER+GY+KG+V +IIHDPGRGAPLA V FR P+++ +KELF+A E
Sbjct: 29 KFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAE 81
Score = 49.2 bits (112), Expect = 1e-06
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = +2
Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPE 253
+ +YTGQ++YCGK A L VGNV+P+G++PE
Sbjct: 80 AEGMYTGQYLYCGKKANLMVGNVLPLGSIPE 110
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 93.1 bits (221), Expect = 8e-20
Identities = 39/70 (55%), Positives = 53/70 (75%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
G ++CN+E +GD ARASG++A VI HNPD +R+KLPSG+KK++PS R M+G V
Sbjct: 110 GAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQV 169
Query: 433 AGGGRIDKPI 462
AGGGR +KP+
Sbjct: 170 AGGGRTEKPM 179
Score = 85.0 bits (201), Expect = 2e-17
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +3
Query: 9 KLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPE 167
K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+A E
Sbjct: 28 KFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAE 80
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2
Query: 161 SRSLYTGQFVYCGKXATLEVGNVMPVGAMPE 253
+ +YTGQF+YCGK ATL VGNV+P+ ++PE
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPE 109
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
GTI+ N+E G +++ RA+G A ++ P + +KLPSG K + + R +G V
Sbjct: 71 GTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAKCRATIGTV 129
Query: 433 A 435
+
Sbjct: 130 S 130
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 253 GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIV 432
GTI+ N+E G +++ RA+G A ++ P + +KLPSG K + + R +G V
Sbjct: 71 GTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAKCRATIGTV 129
Query: 433 A 435
+
Sbjct: 130 S 130
>At3g55660.1 68416.m06184 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 579
Score = 28.3 bits (60), Expect = 2.7
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = -3
Query: 366 SCTLSIRIVSNHSGEVSRGTCQTTXITHFLFKIAHNGTSGMAPTGITFPTSRVAFFPQ*T 187
SC+ +R++S + G+ + LF ++ +GTS T ++F S ++ P
Sbjct: 482 SCSDKLRLLSKEAASGGSGSLREKLSAPSLFSVSFSGTSTPYRT-LSFSASTPSYSPMPL 540
Query: 186 NWPV*RLREQ*RAPSLS 136
P+ R RAP LS
Sbjct: 541 ISPINGGRGGERAPFLS 557
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 303 QTTXITHF-LFKIAHNGTSGMAPTGITFPT 217
Q T +T +FK++HN SG+ P G F T
Sbjct: 846 QLTELTSLSVFKVSHNNLSGVIPQGRQFNT 875
>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 737
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 152 ELLPCLELVWIAEVYNSQRCTSTRVM 75
E LPCLELV I V NS +T M
Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 298 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 462
R +A NF ++G +P T V P+ A+ + P +G GGG + I
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLELSLG---GGGACRRKI 129
>At1g44130.1 68414.m05097 nucellin protein, putative similar to
nucellin GI:2290202 from [Hordeum vulgare]
Length = 405
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 83 W*RCTFGC--CTLPRSIQVQDKEGALHCSRSLYT 178
W +C C CTLP ++Q + K + CS + T
Sbjct: 74 WVQCDAPCSGCTLPPNLQYKPKGNIIPCSNPICT 107
>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 901
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +1
Query: 190 LLWKEXNS*SWKCDACWSHA*GTIVCNLEEKMGDXSRLARASGNFATVIGHNPDAKRTRV 369
L+ E ++ SW+ C H VC + K+ + ++ + + +T+I +P R R+
Sbjct: 469 LVIAEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQSPSRSR-RL 527
Query: 370 KLPSG 384
+ SG
Sbjct: 528 TVHSG 532
>At2g26420.1 68415.m03170 1-phosphatidylinositol-4-phosphate
5-kinase, putative / PIP kinase, putative /
PtdIns(4)P-5-kinase, putative / diphosphoinositide
kinase, putative similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 705
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 229 HISNFKSCXLSTINKLACVEASGAMKSSFLVL-NLYGS 119
H+S +K+ ++ + CV+ G K+ F+V+ NL+ S
Sbjct: 462 HVSKYKNSLVTKFFGVHCVKPVGGQKTRFIVMGNLFCS 499
>At1g77480.2 68414.m09023 nucellin protein, putative similar to
nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
(nucellin: similar to aspartic protease and its specific
expression in nucellar cells during degeneration)
Length = 432
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 83 W*RCTFGC--CTLPRSIQVQDKEGALHCSRSLYTG 181
W +C C CT PR+ Q + L CS L +G
Sbjct: 92 WVQCDAPCNGCTKPRAKQYKPNHNTLPCSHILCSG 126
>At1g77480.1 68414.m09022 nucellin protein, putative similar to
nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
(nucellin: similar to aspartic protease and its specific
expression in nucellar cells during degeneration)
Length = 466
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 83 W*RCTFGC--CTLPRSIQVQDKEGALHCSRSLYTG 181
W +C C CT PR+ Q + L CS L +G
Sbjct: 92 WVQCDAPCNGCTKPRAKQYKPNHNTLPCSHILCSG 126
>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
thaliana]
Length = 268
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 320 TSPL*LDTILMLSVQE*SYRLEPRRFCHQATEAWSVLLLEVDVLT 454
T P+ L L SV P R CH A +A+ + E+D L+
Sbjct: 172 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLS 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,237
Number of Sequences: 28952
Number of extensions: 239166
Number of successful extensions: 702
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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