Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00119
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 147 7e-36
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 54 1e-07
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 48 1e-05
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 31 0.95
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 30 2.2
SB_51850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17) 29 5.1
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 28 6.7
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 147 bits (357), Expect = 7e-36
Identities = 66/84 (78%), Positives = 77/84 (91%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRL 181
EHIVAGAGELHLEICLKDLEEDHACIP+KKS+PVVSYRE V+++S+Q+CLSKSPNKHNRL
Sbjct: 517 EHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSYRECVSDKSNQMCLSKSPNKHNRL 576
Query: 182 FMKAQPMPDGLPEDIDEG-RVNPR 250
FM A P+ + LPEDID+G +NPR
Sbjct: 577 FMTAGPLEEKLPEDIDDGCEINPR 600
Score = 106 bits (254), Expect = 2e-23
Identities = 67/136 (49%), Positives = 83/136 (61%), Gaps = 5/136 (3%)
Frame = +3
Query: 333 PRGYRPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTEP 512
P G PN+LVD SKGVQYLNEIKDSVVAGFQWA KEG + +EN+RGVRFNI+DVTLH +
Sbjct: 629 PEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHADA 688
Query: 513 SIE---VVAKSFQQLEDAC--THVC*LLSPVSWSLYIFVKFSVLK*LWXXXXXXXXXXXX 677
+ + +++ AC T LL PV +S+ I S + ++
Sbjct: 689 IHRGGGQIIPTARRVLYACMLTAKPCLLEPV-YSVEIQCPESAVGGIY----GVLNRRRG 743
Query: 678 XXXEESQVAGTPMFIV 725
EES VAGTPMFIV
Sbjct: 744 QVLEESNVAGTPMFIV 759
Score = 105 bits (252), Expect = 4e-23
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +2
Query: 509 AIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 682
AIHRGGGQIIPT RR LYAC+LTA+P L+EPVY EIQCPE AVGGIYGVLNRRRG V
Sbjct: 688 AIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQV 745
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/41 (63%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 232 GSRESPRC-FKTRARYLTEKYEYDVTEARKIWCFGPEGTAP 351
G +PR FK RARYL + Y +DV EARKIW FGPEGT P
Sbjct: 594 GCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGTGP 634
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/62 (58%), Positives = 41/62 (66%)
Frame = +2
Query: 512 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFRR 691
IHRGGGQIIPT RR Y+ L A PRLMEP + E+Q P V +Y VL RRRGHV +
Sbjct: 669 IHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQD 728
Query: 692 VP 697
P
Sbjct: 729 AP 730
Score = 77.8 bits (183), Expect = 8e-15
Identities = 34/80 (42%), Positives = 54/80 (67%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRL 181
EH++ G GEL+L+ + DL ++ I IK +DPV+++ ETV E S C +++PNK N++
Sbjct: 494 EHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCETVVETSSLKCFAETPNKKNKV 553
Query: 182 FMKAQPMPDGLPEDIDEGRV 241
M A+P+ GL EDI+ +V
Sbjct: 554 TMIAEPLEKGLAEDIENEKV 573
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Frame = +3
Query: 333 PRGYRPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTL 500
P PNILVD + + LN +KDS++ GFQWA +EG + +E +R V+F I D +
Sbjct: 605 PENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVI 664
Query: 501 HTEP 512
EP
Sbjct: 665 AGEP 668
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 259 KTRARYLTEKYEYDVTEARKIWCFGPEGTAP 351
K + KY++D+ AR IW FGPE T P
Sbjct: 580 KKLGEFFQTKYDWDLLAARSIWAFGPENTGP 610
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 54.0 bits (124), Expect = 1e-07
Identities = 19/41 (46%), Positives = 31/41 (75%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 124
EH++ AGE+HL+ C+ DL+ +AC+ + SDP++ +RETV
Sbjct: 2 EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 581 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV 682
QP RLM +Y C IQ +G +Y V+ RR G V
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRV 441
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +2
Query: 578 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFRRVP 697
A PRLMEP + E+Q P V +Y VL RRRGHV + P
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAP 40
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 83 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP--EDIDEGRVNPRDA 256
I+K+ Y+E + +E++ L + N+H+ + AQ P GL I+E + N R
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMV 275
Query: 257 SRLALGILQKSTNTML 304
+ L K + +
Sbjct: 276 FKALLSKASKDLDNYI 291
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 161 PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDASRLALGILQKSTNTMLPKP 313
PN N F+KA P+ DG D + G + RD++ G S N L +P
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRDSN---YGTESSSVNEDLQRP 460
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 110 YRETVAEESDQLCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRDAS 259
Y+ + L K N H+ LF K + +P L ED++EG V D++
Sbjct: 230 YKSISTRRELYMLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEEDSA 281
>SB_51850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 341 PSGPKHQILRASVTSYSYFSVRYRARVLKHRGDSRDPHQCPLA 213
P GPKH+ RA++ ++ R + ++H+ R +CPLA
Sbjct: 13 PEGPKHRYFRANM----LYNTLARIKGVQHKEKKRIKKKCPLA 51
>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 401 LNFIEVLNSFGAIHQDVGAVPSGPKHQILRASV 303
LN +E N FG + Q+ G + KH+ L+ V
Sbjct: 329 LNMLEARNDFGVVEQNDGCQQNRSKHEFLQVYV 361
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 512 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 610
+ R +I+PT RR + LLT+ +PVY+
Sbjct: 538 VRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
Length = 232
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 104 VSYRETVAEESDQLCLS-KSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRDAS 259
V +R + +D L+ + N H+ LF K + +P L ED++EG V D++
Sbjct: 29 VKFRYVILNINDFAFLNNRRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEEDSA 83
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 4/24 (16%)
Frame = +2
Query: 197 PMPDGLPEDIDEGR----VNPRDA 256
P+PDG+ E+IDEG+ +NPR +
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPRSS 744
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 579 AVSRHAYKHLLVVGMIWPPPLWMA 508
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,338,663
Number of Sequences: 59808
Number of extensions: 577572
Number of successful extensions: 1473
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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