Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00119
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 332 PKHQILRASVTSYSYFSVRYRARVLKHRGDSRD 234
           P++ + R +++S +    R     L H G S+D
Sbjct: 397 PRYMVWRETISSTATLGFRVEGIKLAHGGSSKD 429


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 332 PKHQILRASVTSYSYFSVRYRARVLKHRGDSRD 234
           P++ + R +++S +    R     L H G S+D
Sbjct: 312 PRYMVWRETISSTATLGFRVEGIKLAHGGSSKD 344


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 332 PKHQILRASVTSYSYFSVRYRARVLKHRGDSRD 234
           P++ + R +++S +    R     L H G S+D
Sbjct: 631 PRYMVWRETISSTATLGFRVEGIKLAHGGSSKD 663


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 378 VQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 494
           ++  N  K +++ GF   A + +  E N +GV    Y+V
Sbjct: 524 IELANTFK-AIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 635 AVGGIYGVLNRRR 673
           A GGIY + N+RR
Sbjct: 317 AEGGIYDISNKRR 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,439
Number of Sequences: 438
Number of extensions: 5032
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)