Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00119
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 123 1e-28
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 86 2e-17
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 84 8e-17
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 84 8e-17
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 56 2e-08
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 39 0.003
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 36 0.021
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 36 0.021
At1g10155.1 68414.m01145 hypothetical protein 32 0.45
At5g13650.2 68418.m01585 elongation factor family protein contai... 31 0.78
At5g13650.1 68418.m01584 elongation factor family protein contai... 31 0.78
At2g03500.1 68415.m00309 myb family transcription factor contain... 31 1.0
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 30 1.4
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 1.8
At5g17300.1 68418.m02026 myb family transcription factor similar... 28 5.5
At3g17310.2 68416.m02213 methyltransferase family protein simila... 28 5.5
At3g17310.1 68416.m02212 methyltransferase family protein simila... 28 5.5
At1g31200.1 68414.m03819 expressed protein 28 5.5
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At5g03415.1 68418.m00294 DPB-1 transcription factor, putative (D... 28 7.2
At4g14990.1 68417.m02303 expressed protein 28 7.2
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si... 28 7.2
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 28 7.2
At3g49750.1 68416.m05439 leucine-rich repeat family protein cont... 28 7.2
At1g70890.1 68414.m08179 major latex protein-related / MLP-relat... 28 7.2
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 27 9.6
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 27 9.6
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put... 27 9.6
At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr... 27 9.6
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 123 bits (296), Expect = 1e-28
Identities = 59/94 (62%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNR 178
EHIVAGAGELHLEICLKDL++D I KSDPVVS+RETV + S + +SKSPNKHNR
Sbjct: 527 EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDRSTRTVMSKSPNKHNR 586
Query: 179 LFMKAQPMPDGLPEDIDEGRVNPRDASRLALGIL 280
L+M+A+PM +GL E ID+GR+ PRD ++ IL
Sbjct: 587 LYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKIL 620
Score = 98.3 bits (234), Expect = 5e-21
Identities = 42/62 (67%), Positives = 52/62 (83%)
Frame = +2
Query: 509 AIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFR 688
AIHRGGGQ+IPT RR +YA +TA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVF
Sbjct: 698 AIHRGGGQVIPTARRVIYASQITAKPRLLEPVYMVEIQAPEGALGGIYSVLNQKRGHVFE 757
Query: 689 RV 694
+
Sbjct: 758 EM 759
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/59 (66%), Positives = 48/59 (81%)
Frame = +3
Query: 333 PRGYRPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTE 509
P PN++VD KGVQYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH++
Sbjct: 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGPLAEENMRGICFEVCDVVLHSD 697
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +1
Query: 232 GSRESPRCFKTRARYLTEKYEYDVTEARKIWCFGPEGTAPTSWWIAPK--EFSTSMK--- 396
G R+ P K R++ L E++ +D A+KIW FGPE T P K ++ +K
Sbjct: 608 GPRDDP---KIRSKILAEEFGWDKDLAKKIWAFGPETTGPNMVVDMCKGVQYLNEIKDSV 664
Query: 397 LRTLLWLDSSGPLRKELWLKRIC 465
+ W GPL +E ++ IC
Sbjct: 665 VAGFQWASKEGPLAEEN-MRGIC 686
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/91 (46%), Positives = 62/91 (68%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRL 181
EH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N+L
Sbjct: 626 EHTILGTGELYLDSIIKDLRELYSEVQVKVADPVVSFCETVVESSSMKCFAETPNKKNKL 685
Query: 182 FMKAQPMPDGLPEDIDEGRVNPRDASRLALG 274
M A+P+ GL EDI+ G V+ D +R+ LG
Sbjct: 686 TMIAEPLDRGLAEDIENGVVS-IDWNRVQLG 715
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/62 (59%), Positives = 42/62 (67%)
Frame = +2
Query: 512 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFRR 691
+HRG GQ+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRG+V
Sbjct: 801 LHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGYVTSD 860
Query: 692 VP 697
VP
Sbjct: 861 VP 862
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +3
Query: 396 IKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTEP 512
+KDS+V GFQW A+EG + +E +R V+F I D + EP
Sbjct: 762 VKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 800
Score = 31.1 bits (67), Expect = 0.78
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 274 YLTEKYEYDVTEARKIWCFGPE 339
+ KY++D+ AR IW FGP+
Sbjct: 717 FFRTKYDWDLLAARSIWAFGPD 738
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 84.2 bits (199), Expect = 8e-17
Identities = 41/91 (45%), Positives = 61/91 (67%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRL 181
EH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N++
Sbjct: 640 EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKI 699
Query: 182 FMKAQPMPDGLPEDIDEGRVNPRDASRLALG 274
M A+P+ GL EDI+ G V+ D +R LG
Sbjct: 700 TMIAEPLDRGLAEDIENGVVS-IDWNRKQLG 729
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/62 (61%), Positives = 42/62 (67%)
Frame = +2
Query: 512 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFRR 691
+HRG GQ+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV
Sbjct: 815 LHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSD 874
Query: 692 VP 697
VP
Sbjct: 875 VP 876
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Frame = +3
Query: 348 PNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTEP 512
PNIL+D + + + +KDS+V GFQW A+EG + +E +R V+F I D + EP
Sbjct: 756 PNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 814
Score = 32.7 bits (71), Expect = 0.25
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 274 YLTEKYEYDVTEARKIWCFGPEGTAP 351
+ KY++D+ AR IW FGP+ P
Sbjct: 731 FFRTKYDWDLLAARSIWAFGPDKQGP 756
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 84.2 bits (199), Expect = 8e-17
Identities = 41/91 (45%), Positives = 61/91 (67%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRL 181
EH + G GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N++
Sbjct: 640 EHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKI 699
Query: 182 FMKAQPMPDGLPEDIDEGRVNPRDASRLALG 274
M A+P+ GL EDI+ G V+ D +R LG
Sbjct: 700 TMIAEPLDRGLAEDIENGVVS-IDWNRKQLG 729
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/62 (61%), Positives = 42/62 (67%)
Frame = +2
Query: 512 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFRR 691
+HRG GQ+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV
Sbjct: 815 LHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSD 874
Query: 692 VP 697
VP
Sbjct: 875 VP 876
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Frame = +3
Query: 348 PNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTEP 512
PNIL+D + + + +KDS+V GFQW A+EG + +E +R V+F I D + EP
Sbjct: 756 PNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEP 814
Score = 32.7 bits (71), Expect = 0.25
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 274 YLTEKYEYDVTEARKIWCFGPEGTAP 351
+ KY++D+ AR IW FGP+ P
Sbjct: 731 FFRTKYDWDLLAARSIWAFGPDKQGP 756
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +2
Query: 2 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 145
EH++A AGE+HLE C+KDL+E A + ++ S P+VSYRET+ + L
Sbjct: 577 EHVLAAAGEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNL 624
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +2
Query: 527 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFR 688
GQ++ + A +L PR++E +Y CE+ +G +Y VL+RRR + +
Sbjct: 853 GQVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILK 906
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 578 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHV--FRRVPGG 703
A PR++EP+ E+ PE +G + G LN RRG + F PGG
Sbjct: 683 AGPRMLEPIMRVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGG 726
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 8 IVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAE 130
++ G GELHLEI + L+ + + P V+YRE++++
Sbjct: 536 VIEGMGELHLEIIVDRLKREFK-VEANVGAPQVNYRESISK 575
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +2
Query: 8 IVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAE--ESDQLCLSKS--PNKHN 175
I++G GELHL+I ++ + ++ + P V++RET+ + E D L +S ++
Sbjct: 504 IISGMGELHLDIYVERMRREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQSGGAGQYG 562
Query: 176 RLFMKAQPMPDGLPEDID 229
R+ +P+P G E +
Sbjct: 563 RVTGYVEPLPPGSKEKFE 580
Score = 34.7 bits (76), Expect = 0.063
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 566 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRG 676
C A+P ++EPV L E++ P G + G +N+R+G
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKG 685
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +2
Query: 8 IVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAE--ESDQLCLSKS--PNKHN 175
I++G GELHL+I ++ + ++ + P V++RET+ + E D L +S ++
Sbjct: 504 IISGMGELHLDIYVERMRREYK-VDATVGKPRVNFRETITQRAEFDYLHKKQSGGAGQYG 562
Query: 176 RLFMKAQPMPDGLPEDID 229
R+ +P+P G E +
Sbjct: 563 RVTGYVEPLPPGSKEKFE 580
Score = 34.7 bits (76), Expect = 0.063
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 566 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRG 676
C A+P ++EPV L E++ P G + G +N+R+G
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKG 685
>At1g10155.1 68414.m01145 hypothetical protein
Length = 184
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 313 RKIWCFGPEGT-----APTSWWIAPKEFSTSMKLRTLLWLDSSGPLRK 441
RK W F P G + +W+ P E T +L+ + WL+ +G K
Sbjct: 24 RKAWVFKPSGLNFIWGGDSRYWVIPNEDRTPAELKKVSWLEVTGSYDK 71
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 587 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 685
+L+EP + ++ PE +G + +L +RRG +F
Sbjct: 473 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMF 505
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 587 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 685
+L+EP + ++ PE +G + +L +RRG +F
Sbjct: 472 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMF 504
>At2g03500.1 68415.m00309 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 432
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -2
Query: 555 HLLVVGMIWPPPLWMAQYG---VLHHRC*I*HHANSLQP 448
HL+V+G IW PP + + +G L+H HH N+ P
Sbjct: 305 HLVVLGGIWVPPEYTSAHGGTPTLYHHQVHHHHTNTAGP 343
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 369 SNPPGCWGGTLGAKAPNLTGFGNIV 295
SNPP WGG + N++G GN V
Sbjct: 68 SNPPRAWGGQQQGRGSNVSGRGNNV 92
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 131 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDI 226
E + LCL PN+H + + A+ +P LPE +
Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75
>At5g17300.1 68418.m02026 myb family transcription factor similar to
CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
profile PF00249: Myb-like DNA-binding domain
Length = 387
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 135 DSSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPAT 10
D+ + S T GS+ L + + S +RSL +S S PA T
Sbjct: 154 DTQSPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALT 195
>At3g17310.2 68416.m02213 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +2
Query: 152 SKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDASRLALGILQKSTNTMLPKPVRFGAL 331
S S + L ++ P + + IDE N +D L L IL KST T P P G +
Sbjct: 50 SSSGSNVKSLLIEMGFCPTLVQKAIDE---NGQDDFELLLEILTKSTETEPPGPSFHGLM 106
Query: 332 APRVPP 349
P+ P
Sbjct: 107 EPKPEP 112
>At3g17310.1 68416.m02212 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +2
Query: 152 SKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDASRLALGILQKSTNTMLPKPVRFGAL 331
S S + L ++ P + + IDE N +D L L IL KST T P P G +
Sbjct: 50 SSSGSNVKSLLIEMGFCPTLVQKAIDE---NGQDDFELLLEILTKSTETEPPGPSFHGLM 106
Query: 332 APRVPP 349
P+ P
Sbjct: 107 EPKPEP 112
>At1g31200.1 68414.m03819 expressed protein
Length = 180
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +1
Query: 313 RKIWCFGPEGT-----APTSWWIAPKEFSTSMKLRTLLWLDSSGPLRK 441
RK W P G + +W+ PKE +L+ + WL+ +G K
Sbjct: 21 RKAWISQPSGLNFVWGGDSRYWVIPKEPRMPAELKMVSWLEVTGSFDK 68
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 17 GAGELHLEICLKDLEEDHACIPIKK 91
G E+ ICL++LE+ H I IKK
Sbjct: 111 GFDEIGCSICLEELEDGHEIIRIKK 135
>At5g03415.1 68418.m00294 DPB-1 transcription factor, putative (DPB)
similar to Swiss-Prot:Q14186 transcription factor DP-1
[Homo sapiens]; contains Pfam profile PF02319:
Transcription factor E2F/dimerisation partner (TDP)
Length = 385
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 369 SKGVQYLNEIKDSVVAGFQWAAKEGVMAEE---NLRGVRFNIYDVTLHTEPSIEVVAKSF 539
SKG NE+ D +VA F +G ++ + + +R +YD L+ ++++++K
Sbjct: 117 SKGRTTYNEVADELVAEFALPNNDGTSPDQQQYDEKNIRRRVYD-ALNVLMAMDIISKDK 175
Query: 540 QQLE 551
++++
Sbjct: 176 KEIQ 179
>At4g14990.1 68417.m02303 expressed protein
Length = 787
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 663 FSTP*IPPTATSGH*ISQRYTGSMRRG*AVSRHAYKHLLVVGMIWPPPLWMAQYGVLH 490
FS P P + S +S G G ++R+A + M+ PP W+ G+LH
Sbjct: 214 FSAPNASPLSNSTFHLSGLSHGPSHYGNNLARYASCGPTLGNMVQQPPHWVTDPGLLH 271
>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 720
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 121 GLTVRHDRVRLLDWNASMVLLKILKTDLKMEFSSTSDNV 5
G TV+ DRV W +++ +++TD +EF N+
Sbjct: 348 GGTVKEDRVSEWLWTLHRIVVDVVRTDSHLEFYEDPGNL 386
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/94 (20%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 EHIVAGAGELHLEIC-LKDLEEDHACIPIKKSDPVVSYR---ETVAEESDQLCLSKSPNK 169
++ V + H +IC K+ + D + + D +++R + +AEE+ + S+S +
Sbjct: 147 KYAVQSDWKAHSKICGTKEYKCDCGTL-FSRRDSFITHRAFCDALAEENARSHHSQSKKQ 205
Query: 170 HNRLFMKAQPMPDGLPEDIDEGRVNPRDASRLAL 271
+ + + P+P+ +P +D + +S L +
Sbjct: 206 NPEILTRKNPVPNPVPAPVDTESAKIKSSSTLTI 239
>At3g49750.1 68416.m05439 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to resistance
gene Hcr2-5B, Lycopersicon esculentum, EMBL:AF053997
Length = 274
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Frame = -1
Query: 625 TLNFTKIYRLHETGLSS*QTCVQASSSCWN----DLATTSMDGSV-----WSVTS*MLNL 473
T N +IY+L T LS + S+C N DL++ + G + + V +LNL
Sbjct: 69 TCNNGRIYKLSLTNLSLRGSISPFLSNCTNLQSLDLSSNQISGVIPPEIQYLVNLAVLNL 128
Query: 472 TPRKFSSAITPSLA 431
+ S ITP LA
Sbjct: 129 SSNHLSGEITPQLA 142
>At1g70890.1 68414.m08179 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:294062] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 158
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 202 HGLSLHE*TVVLVGRL*ETELVRFLSYG-LTVRHDRVRLLDWNASMVLLKILKTDLKMEF 26
HG LHE VG + + +++ G LTV +++ +D +++ K+L+ DL E+
Sbjct: 44 HGCELHEGDWGKVGSI---VIWKYVHDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEY 100
Query: 25 SS 20
S
Sbjct: 101 KS 102
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 59 EEDHACIPIKKSDPVVSYRETVAEESD--QLCLSKSPNKHNRLFMKAQPMPDGL 214
EE + +K + S ++TV+EE D + LS P K +K Q P+G+
Sbjct: 25 EEQRRRLLAEKREDSKSQKKTVSEEDDSEKRFLSHVPRKKRSSLVKRQQKPNGV 78
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 35 LEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 214
+E KD + I + V + + E + LCL PN+ + + A+ +P L
Sbjct: 13 VEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPEL 72
Query: 215 PE 220
PE
Sbjct: 73 PE 74
>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 851
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 293 SYFSVRYRARVLKHRGDSRDPHQCPLADHQAWAE 192
+YFS R++++ D D H P D AW E
Sbjct: 202 NYFSTS--RRIIRYPNDVNDRHWYPFFDEDAWTE 233
>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1049
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -3
Query: 482 VESNTTQILFSHNSFLSGPLESSHNRVLNFIEVLNSFGAIHQDVGAVPSGPKHQILRASV 303
+ S + + L N L+GP+ +S + N + + SF + +V A S PK+ L ++
Sbjct: 286 ITSKSLKFLVLRNMNLTGPIPTSLWDLPNLMTLDLSFNRLTGEVPADASAPKYTYLAGNM 345
Query: 302 TS 297
S
Sbjct: 346 LS 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,517,679
Number of Sequences: 28952
Number of extensions: 397868
Number of successful extensions: 1147
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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