Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00118
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    50   1e-07
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   0.77 
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   3.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    24   7.2  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   7.2  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    24   9.5  
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    24   9.5  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
 Frame = +1

Query: 124 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDKKLQSSLK 255
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DDKK+Q +LK
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALK 46



 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = +3

Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 383
           +KL++  + GI+EVNM KEDG VI+F  P   +SL   T AI G
Sbjct: 46  KKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYG 89


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 61  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKKKV 204
           NSV++K         +  NSR+NS    +  S V + G  G+P  K+K+
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKM 179


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 204
           K  +   +KLKK   ++++    T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 103 FTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSS 249
           F +K S+ + +    + SQ+ IGG   P   +K+        D  +Q +
Sbjct: 77  FAMKRSQTSVQP--SMSSQIAIGGMRNPMATRKIAGTYRDAPDNSMQQT 123


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 204 NLLLASRCALTADAYLRLEFL*FFAVHSAVFKRK 103
           N +LASR  LT   +LRL  L    +   VF ++
Sbjct: 107 NTMLASRAPLTVPMFLRLSDLKLNGIVVLVFSKQ 140


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 220 PQ*REQPSSCVSVCPYR 170
           P   EQP+ CV+ CP R
Sbjct: 164 PSRNEQPAFCVNWCPSR 180


>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 231 QKTAVIAQKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 383
           +K   + QKL +  + GI  V M +    ++  N P    S + N + + G
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLG 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,460
Number of Sequences: 5004
Number of extensions: 27673
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)