Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00118
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 63 7e-11
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 63 7e-11
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 53 9e-08
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 31 0.25
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 29 1.3
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 29 1.7
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 27 4.0
05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790 27 4.0
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 27 5.3
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 26 9.2
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 26 9.2
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 63.3 bits (147), Expect = 7e-11
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1
Query: 124 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+LQS+LK
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLK 45
Score = 57.6 bits (133), Expect = 3e-09
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +3
Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 383
+++ VNTIPGIEEVN+ K+D VI F NPK QAS+ ANT+ ++G
Sbjct: 45 KRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSG 87
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 63.3 bits (147), Expect = 7e-11
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +1
Query: 124 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK+LQS+LK
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLK 484
Score = 56.8 bits (131), Expect = 6e-09
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = +3
Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 383
+++ VN IPGIEEVN+ K+D VI F NPK QAS+ ANT+ ++G
Sbjct: 484 KRVGVNNIPGIEEVNIFKDD-VVIQFQNPKVQASIGANTWVVSG 526
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 52.8 bits (121), Expect = 9e-08
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +1
Query: 160 VRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
VR GGKGT RRKKK VH T TDDK+LQS+LK
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLK 36
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 341
+++ VNTIP IEEVN+ K+D VI F NPK
Sbjct: 36 KRVGVNTIPAIEEVNIFKDD-LVIQFVNPK 64
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +1
Query: 61 NSVIKK-CPVLTLTQFTLKNSRMNSEKLKKLQS--QVRIGGKGTPRRKKKVVHVTAATDD 231
++V+++ C + + + LK E+LKKL + R GG G P R K +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASASTS 300
Query: 232 KKLQSS 249
+LQ S
Sbjct: 301 IRLQLS 306
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 146 NSSRKYASAVRAHRDARRR--LFTLLRPQMTKNCSHRSKVVSEHNSWHRRGKYDQRGR 313
+S RKY A A R ARR RP M+++ S + VS + RR + R R
Sbjct: 163 DSRRKYNDAASADRSARRSHDYDDQRRPTMSRSYSQNDRRVSSDSRLDRRRRSRSRSR 220
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 166 IGGKGTPRRKKKVVHVTAATDDKKLQSSLKSC 261
+G +G R+K+ VH T + DD KL + C
Sbjct: 314 MGTEGVEFRRKRFVHCTLSLDDVKLVKNAMKC 345
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 114 KQQNEQRKIKETPVASTHRR*GHTETQEEGCSRYCGH--R*QKTAVIAQKLSVN 269
++Q EQ+K ++ VA+ R+ G E +E+ R C R Q+ + L+VN
Sbjct: 1368 QKQEEQKKKRDADVAAKKRQRGEEERKEKQRKRKCTEEARKQQKQPTEKSLAVN 1421
>05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790
Length = 216
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 58 LNSVIKKCPVLTLTQFTLKN--SRMNSEKLKKLQSQVRI-GGKGTPRRKKKVVHVTAATD 228
L + K V +LT ++K S M + +KL+++ GK P +KKK +HV A
Sbjct: 140 LMKAMNKLAVASLTSTSVKEIVSSMTTVANEKLKAEKAADAGKKKPGQKKKRLHVNKAEG 199
Query: 229 DK 234
K
Sbjct: 200 QK 201
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 273 LCSLTTFER*LQFFVICGRSNVNNLLLASRCALTADA 163
LC++ T + LQ F G + LLLA RC +T DA
Sbjct: 80 LCAILTNKAALQAF---GVAPEQGLLLAKRCGVTTDA 113
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 199 SSCVSVCPYRRCVLATGVSLIFRCS 125
+SC +CPY A G+++IF C+
Sbjct: 133 TSC-PICPYVLLAAAVGITIIFLCT 156
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 312 GTVIHFNNPKAQASLAANTFAITGHG 389
GTVIHFN ++ + + T + TG G
Sbjct: 569 GTVIHFNRARSVSVHTSGTISATGLG 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,001,267
Number of Sequences: 37544
Number of extensions: 186021
Number of successful extensions: 448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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