Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00118
(391 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05) 66 1e-11
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7) 29 1.4
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 2.4
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 28 3.1
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 7.2
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 27 7.2
SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8) 26 9.5
>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
Length = 98
Score = 65.7 bits (153), Expect = 1e-11
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +3
Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAA 362
+KLSVN IPGIEEVNMIKEDGTVIHFNNPKA+ A
Sbjct: 50 KKLSVNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGA 86
>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
Length = 335
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ +Y +YE SM + R H
Sbjct: 139 NCLWTLFGHTLRTVYRHYSDTRYELSMDVIRTH 171
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ Y +YE SM + R H
Sbjct: 10 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 42
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ Y +YE SM + R H
Sbjct: 45 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 77
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ Y +YE SM + R H
Sbjct: 80 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 112
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ Y +YE SM + R H
Sbjct: 209 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 241
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ Y +YE SM + R H
Sbjct: 244 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 276
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ Y YE SM + R H
Sbjct: 174 NCLWTLFGHTLRTVYGRYSDTHYELSMDVIRTH 206
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 193 CVSVCP-YRRCVLATGVSLIFRCSFCC 116
C S+C Y RCV+ V++ CS C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 104 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 6
NC+ GH T++ Y +YE SM + R H
Sbjct: 58 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 90
>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 238 VFCHLWPQ*-REQPSSCVSVCPY 173
VF +WP+ RE P+SC+S P+
Sbjct: 734 VFAFIWPRFYREAPASCISELPW 756
>SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 70 IKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPR 189
I P+L T+F+ +N+++ EK Q+ V G + P+
Sbjct: 73 IDNLPILLFTRFSCRNTQVREEKNLTSQNCVESGNEKIPK 112
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 167 SAVRAHRDARRRLFTLLRPQMTKNCSHRSKVVSEHNSWHRRG 292
+ +R + A RR + + Q C S +++W RRG
Sbjct: 1343 AVMRCYHQANRRGYRVFSMQANNECRSGPTAHSSYSAWGRRG 1384
>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 76 KCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
K P L+ K + +E+ +KL S+VR G RR+K + T DKK + LK
Sbjct: 692 KAPALSHESLR-KKLQTEAERQEKLTSKVR--GNLEARRRKDIDQNTENDPDKKRRVQLK 748
Query: 256 S 258
+
Sbjct: 749 A 749
>SB_22380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 182 HRDARRRLFTLLRPQMTKNCSHRSKVVSEHNSWHRR 289
H +R + T R Q+T N + V+S HNS H R
Sbjct: 473 HVTTQRHVTT--RRQVTHNVRSQHSVMSRHNSMHNR 506
>SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 233 KNCSHRSKVVSEHNSWHRRGKYDQR 307
+N HR +++S+ N HR G +R
Sbjct: 257 RNLQHRQRLISKRNLQHREGMISKR 281
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 233 KNCSHRSKVVSEHNSWHRRGKYDQR 307
+N HR +++S+ N HR G +R
Sbjct: 161 RNLQHRERLISKRNLQHREGLISKR 185
>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 441
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 61 NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRI 168
N V+ + +L L + LKN + NSE LKKL RI
Sbjct: 96 NEVVSREILLQLIGYLLKNYQENSE-LKKLVDSTRI 130
>SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8)
Length = 159
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 203 LFTLLRPQMTKNCSHRSKVVSEHNSWHRRGK 295
LF L +TKN S +++ E W RR +
Sbjct: 32 LFYLDNDMITKNISKAKELIEEGGDWDRRNR 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,868
Number of Sequences: 59808
Number of extensions: 228361
Number of successful extensions: 610
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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