Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00118
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    78   3e-15
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical pr...    26   8.2  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    26   8.2  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    26   8.2  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 34/44 (77%), Positives = 39/44 (88%)
 Frame = +3

Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 383
           +KLSV  IPGIEEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG
Sbjct: 51  KKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTG 94



 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 35/50 (70%), Positives = 43/50 (86%), Gaps = 3/50 (6%)
 Frame = +1

Query: 115 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DDKKLQS+LK
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLK 51


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 133 EKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
           E ++K + Q+RI GKG   R   + H T   DD   +  L+
Sbjct: 442 EDVEKSEQQIRINGKG---RLSSIQHDTEEIDDSTFKKKLQ 479


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 58  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 144
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 58  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 144
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


>Z79755-3|CAB02108.1|  355|Caenorhabditis elegans Hypothetical
           protein F43G9.4 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 130 SEKLKKLQSQVRIGGKGTPRRKKKVV 207
           SEK+KK+  +V     G P ++KK V
Sbjct: 115 SEKMKKMNGEVTKNKTGKPEKRKKKV 140


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 266 H*QLLSDDCSFLSSVAAVT*TTFFLRLGVPLPP 168
           H  LL DD S  SS+A +T   +     +PLPP
Sbjct: 33  HHSLLPDD-SISSSLAPLTHNPYAFNYSIPLPP 64


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 257 VVSEHNSWHRRGKYDQRGR 313
           V + H++WH  G  D RGR
Sbjct: 40  VNAHHSAWHSEGSEDTRGR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,773,723
Number of Sequences: 27780
Number of extensions: 171344
Number of successful extensions: 442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)