Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00118
(391 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73230.1 68414.m08475 nascent polypeptide-associated complex ... 64 2e-11
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ... 64 4e-11
At2g43110.1 68415.m05352 expressed protein 33 0.090
At3g61280.1 68416.m06858 expressed protein ; expression supporte... 29 1.5
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 28 2.6
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 2.6
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 3.4
At5g06810.1 68418.m00770 mitochondrial transcription termination... 27 5.9
At5g15150.1 68418.m01775 homeobox-leucine zipper protein 7 (HAT7... 26 7.8
At3g61290.1 68416.m06859 hypothetical protein 26 7.8
>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
(NAC) domain-containing protein similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain
Length = 165
Score = 64.5 bits (150), Expect = 2e-11
Identities = 30/44 (68%), Positives = 34/44 (77%)
Frame = +1
Query: 124 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
MN EKL K+ + VR GGKGT RRKKK VH T TDDK+LQS+LK
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLK 44
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +3
Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 383
+++ VN+IP IEEVN+ K+D VI F NPK QAS+AANT+ ++G
Sbjct: 44 KRVGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSG 86
>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
(NAC) domain-containing protein / BTF3b-like
transcription factor, putative similar to SP|P20290
Transcription factor BTF3 (RNA polymerase B
transcription factor 3) {Homo sapiens}; contains Pfam
profile PF01849: NAC domain; identical to cDNA
BTF3b-like factor GI:5912423
Length = 165
Score = 63.7 bits (148), Expect = 4e-11
Identities = 30/44 (68%), Positives = 34/44 (77%)
Frame = +1
Query: 124 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLK 255
MN EKL K+ + VR GGKGT RRKKK VH T TDDK+LQS+LK
Sbjct: 1 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLK 44
Score = 55.6 bits (128), Expect = 1e-08
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +3
Query: 252 QKLSVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 383
+++ VN+IP IEEVN+ K+D VI F NPK QAS+AANT+ ++G
Sbjct: 44 KRIGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSG 86
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 32.7 bits (71), Expect = 0.090
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +1
Query: 58 LNSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA 219
L+S+ K+CP + L LK E++ L+ +V IG GTP R KK+V + A
Sbjct: 172 LHSLTKQCPAVKLFSKHLKVE----EQVSLLKKRVNIGS-GTPNRIKKLVDIEA 220
>At3g61280.1 68416.m06858 expressed protein ; expression supported
by MPSS
Length = 338
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 146 NSSRKYASAVRAH-RDARRRLFTLLR-PQMTKNCSHRSKVVSEHNSWHRRGKY 298
N S KY VR + +D R + R + C+HR K+ E N+W KY
Sbjct: 111 NFSDKYDPMVRLYVQDWRSEIEAGFRGSNLEDQCTHRYKIYIEGNAWSVSEKY 163
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 97 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 204
+Q K R+N E++K L+ +G K P RK ++
Sbjct: 80 SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQL 115
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 233 KNCSHRSKVVSEHNSWHRRGKYDQRGRYCD 322
K+ HR SEH+ HR G+ GRY D
Sbjct: 532 KDTLHRDSRWSEHSPGHRVGRKRIHGRYSD 561
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 3.4
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +2
Query: 143 RNSSRKYASAVRAHRDARRRLFTLLRPQMTKNCSHRSKVVSEHNSWHR-RGKYDQRGRYC 319
R+ SRK R++R R + + K C R + S H + + R + RG +
Sbjct: 191 RDGSRKSRDPQDRERNSRDREWDSRDREWDKRCYSRERDESPHKRYEKSRSRSTGRGEF- 249
Query: 320 DTL*QPEGTSVAGREHVRDYR 382
S GR H R YR
Sbjct: 250 -----SRSRSPRGRSHGRSYR 265
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 97 TQFTLK-NSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQSSLKSC 261
TQF L + NSE++++ R GKG+ R++ V V+ +K ++ +K+C
Sbjct: 988 TQFLLDLGYKENSEEMERALKNFR--GKGSELRERFNVLVSFGLTEKDVKDMVKAC 1041
>At5g15150.1 68418.m01775 homeobox-leucine zipper protein 7 (HAT7) /
HD-ZIP protein 7 / HD-ZIP protein (HB-3) identical to
homeobox-leucine zipper protein HAT7 (HD-ZIP protein 7)
(HD-ZIP protein ATHB-3) (SP:Q00466) [Arabidopsis
thaliana]
Length = 314
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 112 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 204
K R+N E+++ L+ +G K P RK ++
Sbjct: 115 KKKRLNLEQVRALEKSFELGNKLEPERKMQL 145
>At3g61290.1 68416.m06859 hypothetical protein
Length = 455
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +2
Query: 146 NSSRKYASAVRAHRD--ARRRLFTLLRPQMTKNCSHRSKVVSEHNSWHRRGKY 298
N S KY VR + + R + C+HR K+ E +W KY
Sbjct: 223 NFSDKYDPMVRLYEQDWGKEREIGFKSSNLEDQCTHRYKIYIEGRAWSVSKKY 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,021,317
Number of Sequences: 28952
Number of extensions: 147701
Number of successful extensions: 412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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