Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00117
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    35   0.008
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...    28   1.2  
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...    28   1.2  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   8.7  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   8.7  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
 Frame = +1

Query: 199  TKVRVEKQKI*RTEEAYEILVNIVLIEAKDLPDDQTTTCNGLYCKFKL-GNESHKSRQVL 375
            T V V+ +++   E   E+ V++  I+A DLP   +   +  +  F+L G E ++++   
Sbjct: 1021 TPVPVKLEEVEMYENMGEMTVDV--IKATDLPAADSNGKSDPFVVFELQGEEVYRTKTHK 1078

Query: 376  KT-KPAWCERFNIYL--YEENNLEVSL--WHKGKQKNFMGRCVIDLSRLEKKRLT 525
            +T  P + E F + L   +  N   ++  W  G + + +G CVID   L++++ T
Sbjct: 1079 RTLNPTFNESFEVELPCKQTCNFVANVFDWDFGNKDDHLGSCVIDCKLLQQQQQT 1133


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +1

Query: 343  GNESHKSRQVLKTKPAWCERFNIYLYEENNLEVSLWHKGK--QKNFMGRCVIDLS 501
            G    K+R +    P W + F +   +   +  +LW KGK       GR    LS
Sbjct: 838  GRRIGKTRPIHSMNPRWDDTFEVKTKDALMITANLWSKGKFNDHEIFGRSSFTLS 892


>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 370 VLKTKPAWCERFNIYLYEENNLEVSLWHKGKQK 468
           V++ + AW  +  +YLY E+N  V +  KG+ K
Sbjct: 80  VVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMK 112


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 370 VLKTKPAWCERFNIYLYEENNLEVSLWHKGKQK 468
           V++ + AW  +  +YLY E+N  V +  KG+ K
Sbjct: 80  VVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMK 112


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 476 WE-DASLTFLDSKRKDSRYLAGIGMWIR 556
           W+ D SL F + +  D +YL   G W++
Sbjct: 373 WKTDCSLPFKEMRVDDGKYLCRDGSWVK 400


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 525 DIWQELECGYGFIHM 569
           +IW  LECGY + +M
Sbjct: 202 EIWLALECGYRYYYM 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,418
Number of Sequences: 5004
Number of extensions: 51025
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)