Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00117
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0073 + 17669311-17671635 38 0.006
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 37 0.011
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 37 0.014
04_04_1695 + 35433975-35437040 34 0.10
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665... 34 0.10
07_03_0394 - 17633753-17636788 33 0.13
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 31 0.71
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 30 1.2
01_06_1525 + 37988037-37988237,37988315-37988410,37988508-379886... 30 1.2
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617... 29 2.2
03_01_0457 - 3506709-3506717,3507386-3507484,3507701-3508034,350... 29 2.2
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931... 29 3.8
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 3.8
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180... 28 5.0
06_03_1332 - 29403320-29407804 28 6.7
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 27 8.8
01_01_0186 + 1598046-1598234,1599215-1599277,1599359-1599448,159... 27 8.8
>05_04_0073 + 17669311-17671635
Length = 774
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 271 LIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQV-LKTKPAWCERFNIYLYEENNLEVSL 447
+++AKDLP T Y + KLGN +R KT P W + F + V +
Sbjct: 46 VVKAKDLPSKDITGSCDPYVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKERIQSSVVEI 105
Query: 448 WHKGK---QKNFMGRCVIDLSRLEKK 516
K K + +F+GR + DL+ + K+
Sbjct: 106 IVKDKDFVKDDFIGRVLFDLNEVPKR 131
Score = 31.1 bits (67), Expect = 0.71
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Frame = +1
Query: 217 KQKI*RTEEAYEILVNIVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSR-QVLKT-KPA 390
+ K+ T + + + VN+ IEA+DL + T +Y K LGN++ ++R +T P
Sbjct: 191 RSKVYLTPKLWYLRVNV--IEAQDLIPNDRTRFPDVYVKAMLGNQALRTRVSPSRTLNPM 248
Query: 391 WCERFNIYLYE--ENNLEVSLWHK---GKQKNFMGRCVIDLSRLEKK 516
W E E E +L +S+ + GK + +GR +I L + ++
Sbjct: 249 WNEDLMFVAAEPFEEHLILSVEDRIAPGKD-DVLGRTIISLQHVPRR 294
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 LVNIVLIEAKDLP--DDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAWCERFNIYLYE- 423
++++ +I A+DLP D + K G K+R V +T P W + F+ + +
Sbjct: 435 VLSVTVISAEDLPPMDVMGKADPFVVLYLKKGETKKKTRVVTETLNPIWNQTFDFVVEDA 494
Query: 424 -ENNLEVSLW-HKGKQKNFMGRCVIDLSRL 507
+ L V +W H K+++GRC++ L+R+
Sbjct: 495 LHDLLMVEVWDHDTFGKDYIGRCILTLTRV 524
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 268 VLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKTKPAWCERFNI 411
++ + D PD TCNG YC + N+ HK + AW F I
Sbjct: 159 IMCKEDDAPDPIINTCNGFYCDWFSPNKPHKPTMWTEAWTAWYTGFGI 206
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAWCE--RFNIYLYEENNL 435
+ +++A+DLP+ T Y + +LGN +R + K P W + F+ + + L
Sbjct: 293 VSVVKARDLPNMDITGALDPYVEVRLGNFKGVTRHLEKNPNPVWRQVFAFSRDHLQSSQL 352
Query: 436 EVSLWHKGKQK-NFMGRCVIDLSRLEKK 516
EV + K K +F+GR V D++ + +
Sbjct: 353 EVVVKDKDVLKDDFVGRVVFDMTDIPNR 380
>02_02_0088 -
6655493-6655601,6656057-6656259,6656382-6656594,
6656683-6656792,6656878-6656981,6657076-6657245,
6657337-6657501,6657584-6657702,6657853-6657940,
6658035-6658140,6658235-6658323,6658461-6658604,
6658715-6658807,6658906-6658972,6659116-6659228,
6659306-6659401,6659524-6659724
Length = 729
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 268 VLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKTKPAWCERF 405
V+ + D PD TCNG YC + N+++K + W F
Sbjct: 227 VMCKQDDAPDPVINTCNGFYCDYFSPNKNYKPSMWTEAWTGWFTSF 272
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 271 LIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAWCERFNI--YLYEENNLEV 441
+++A+DLP T Y + LGN K+R K +P W E F + + +LEV
Sbjct: 281 VVKARDLPHMDITGSLDPYVEVHLGNYKMKTRHFEKNQRPEWDEVFAFPREVMQSTSLEV 340
Query: 442 SLWHKG-KQKNFMGRCVIDLSRL 507
+ K + +++GR IDL+ +
Sbjct: 341 IVKDKDFIRDDYVGRVSIDLNEV 363
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 268 VLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKTKPAW 393
V+ + D PD TCNG YC N K + + W
Sbjct: 225 VMCQQSDAPDPLINTCNGFYCDQFTPNSKSKPKMWTENWSGW 266
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +1
Query: 268 VLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKTKPAWCERF 405
++ + D PD TCNG YC N +K + W F
Sbjct: 211 IMCKQDDAPDPVINTCNGFYCDDFTPNSKNKPSMWTEAWSGWFTAF 256
>01_06_1525 +
37988037-37988237,37988315-37988410,37988508-37988620,
37988739-37988805,37988891-37988983,37989095-37989238,
37989681-37989769,37989912-37990017,37990224-37990311,
37990395-37990513,37990786-37990950,37991222-37991406,
37991568-37991668,37991960-37992069,37992287-37992394,
37992596-37992706,37992791-37993002,37993087-37993423,
37993593-37993619,37993767-37993877
Length = 860
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 268 VLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKTKPAWCERF 405
++ + D PD TCN YC N K + + P W + F
Sbjct: 227 IMCQQYDAPDPVINTCNSFYCDQFKPNSPTKPKFWTENWPGWFQTF 272
>04_04_1357 +
32860677-32860781,32861484-32861588,32861678-32861728,
32861829-32861949,32862495-32862616,32863032-32863133,
32863226-32863300,32863391-32863470,32863601-32863751,
32863850-32864080,32864221-32864517,32864638-32864751,
32864857-32865030
Length = 575
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 LVNIVLIEAKDLPDDQTTTCNGLYC--KFKLGNESHKSRQVLKT-KPAWCERFNIYLYE- 423
++++ +I +DLP + Y K +K+R V ++ P W + F+ + +
Sbjct: 442 VLSVTVISGEDLPAMDMNGKSDPYVVLSLKKSKTKYKTRVVSESLNPVWNQTFDFVVEDG 501
Query: 424 -ENNLEVSLW-HKGKQKNFMGRCVIDLSRL 507
+ L + ++ H +++MGRC++ L+++
Sbjct: 502 LHDMLMLEVYDHDTFSRDYMGRCILTLTKV 531
>03_01_0457 -
3506709-3506717,3507386-3507484,3507701-3508034,
3508241-3508443,3508519-3508632,3508707-3508817,
3508907-3509016,3509132-3509241,3509450-3509628,
3509746-3509907,3509996-3510114,3510336-3510423,
3510520-3510625,3510769-3510857,3511211-3511354,
3511459-3511518,3511534-3511656,3511745-3511811,
3511941-3512053,3512140-3512235,3512651-3512818
Length = 867
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +1
Query: 268 VLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKTKPAWCERF 405
V+ + D PD CNG YC N+ +K + W F
Sbjct: 246 VMCKEDDAPDPVINACNGFYCDTFSPNKPYKPTMWTEAWSGWFTEF 291
>10_06_0154 -
11291630-11292106,11292192-11292457,11293027-11293131,
11293210-11293234,11293349-11293465,11293528-11294041,
11295524-11295578,11295980-11296060,11296129-11296219,
11296321-11296417,11297465-11297529,11297950-11298108,
11298208-11298455,11300667-11300835
Length = 822
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +1
Query: 250 EILVNIVLIEAKDLPDDQTTT--CNGL----YCKFKLGNESHKSRQVLKTKPAWC-ERFN 408
E LVN+ + +D+ +D T G C K+ NE S + A ER+
Sbjct: 611 EFLVNLSRAQLEDIVEDFYTRHKVKGSKRLNVCLDKMKNEGVISEESYMNPQAQSTERYK 670
Query: 409 IYLYEENNLEVSLWHKGKQK 468
I YEE NLE+++ + K++
Sbjct: 671 IKQYEELNLEIAMRERDKEE 690
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 85 P*RFRYGSDGTEHAGGISRHHGPDRKRTF 171
P R+RY +H RHHG DR+ F
Sbjct: 1290 PERYRYDGHDRDHHRHDRRHHGHDRRHHF 1318
>01_03_0145 -
13116302-13116958,13117365-13117430,13117786-13118065,
13118283-13119028
Length = 582
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 491 MTHLPIKFFCFPLCHKDTSKLFSSYKYILNLSHHAGF 381
++HL FCF +C K S+K ++ HA F
Sbjct: 82 VSHLKNNSFCFQVCSKQVGFHILSFKNFISKDFHARF 118
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 146 MDRIGSGLSLLRDHGKKVQKYVWKNRKFDVLKKPTK 253
MD G GLS L DHG+ + KF V P++
Sbjct: 1327 MDLSGEGLSSLLDHGQLTDLRIQMTPKFFVRSDPSR 1362
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 268 VLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKTKPAWCERFN 408
++ + D PD TCNGL C + ++ L T+ W R N
Sbjct: 218 MMCKQNDAPDPVINTCNGLICGETFVGPNSPNKPALWTE-NWTSRSN 263
>01_01_0186 +
1598046-1598234,1599215-1599277,1599359-1599448,
1599968-1600093,1600583-1600726,1600845-1601255,
1601283-1601364,1601403-1601491,1602250-1602471,
1602552-1602827,1603116-1603253,1603772-1604077,
1604203-1604421
Length = 784
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 259 VNIVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAWCERF 405
+ +V+IEA+DL + Y + G++ +++ V KT P W + F
Sbjct: 575 IELVIIEARDLIAADLRGTSDPYVRVHYGSKKKRTKVVYKTLSPDWNQTF 624
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,070
Number of Sequences: 37544
Number of extensions: 314784
Number of successful extensions: 886
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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