Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00117
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31) 45 6e-05
SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22) 31 0.97
SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22) 31 0.97
SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 31 0.97
SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_37133| Best HMM Match : rve (HMM E-Value=0.23) 29 2.9
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33) 29 3.9
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16) 28 6.8
SB_37036| Best HMM Match : Cu_bind_like (HMM E-Value=5.5) 28 6.8
SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_55549| Best HMM Match : zf-C2H2 (HMM E-Value=0.79) 27 9.0
>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/97 (34%), Positives = 66/97 (68%), Gaps = 4/97 (4%)
Frame = +1
Query: 241 EAYEILVNIVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAWCERFNIYL 417
+ ++ +V+I+L+E K + + + YC+F+LGNE +KS+ +T P W E+F++ +
Sbjct: 270 QLWDGIVSIILVEGKKMIPMDDSGFSDPYCRFRLGNEKYKSKACKETLNPQWSEQFDLKM 329
Query: 418 YEENN--LEVSLWHKGKQKN-FMGRCVIDLSRLEKKR 519
Y ++ LE++++ + +K+ FMGRC IDL++LE+++
Sbjct: 330 YPDSPMVLEITVYDRDIRKDEFMGRCQIDLNQLEREK 366
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 510 KEKTHDIWQELECGYGFIHMLITVNGS 590
+EK+H I ELE G G I M +++ GS
Sbjct: 364 REKSHKIEAELEDGAGIIVMHLSITGS 390
>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
Length = 778
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTT--TCNGLYCKFKLGNESHKSRQVLKTKPAWCE--RFNIYLYEENN 432
+ +I A DLP D T+ T L CK +G S + QV P W + RF I N
Sbjct: 419 VKIINAIDLPKDMTSIETPTWLLCKVNVGKTSKDTFQVSSAAPTWSQGLRFLISDPRTQN 478
Query: 433 LEVSLWHKGKQKNFMGRCVIDLSRL 507
+++S+ +G K +G C DL R+
Sbjct: 479 VKISIL-EGGDKKVLGYCNFDLKRI 502
>SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 344
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAW 393
+ ++E DL + + YC+ +G++ HK+R +T P W
Sbjct: 271 VTIVEGVDLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKW 314
>SB_43325| Best HMM Match : C2 (HMM E-Value=1.1e-22)
Length = 87
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAW 393
+ ++E DL + + YC+ +G++ HK+R +T P W
Sbjct: 14 VTIVEGVDLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKW 57
>SB_20559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAW 393
+ ++E DL + + YC+ +G++ HK+R +T P W
Sbjct: 227 VTIVEGVDLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKW 270
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAW 393
+ ++E DL + + YC+ +G++ HK+R +T P W
Sbjct: 936 VTIVEGVDLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKW 979
>SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTTTCNGLYCKFKLGNESHKSRQVLKT-KPAW 393
+ ++E DL + + YC+ +G++ HK+R +T P W
Sbjct: 271 VTIVEGVDLKSSDPSGMSDPYCEVSMGSQEHKTRVCPQTLNPKW 314
>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
Length = 359
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 394 CERFNIYLYEENNLEVSLWHKGKQKNFMGRCVIDLSRLEK 513
C+RFN Y+Y +N+ V HK + F+ RL++
Sbjct: 64 CDRFNAYVYGPHNVNVETEHKPLEPIFVKPLASAPQRLQR 103
>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
Length = 567
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Frame = +1
Query: 217 KQKI*RTEEAYEILVNIVLIEAKDLPDDQTTTCNGLYCKF-----KLGNESHKSRQVLKT 381
K+K R A + +++ ++EAK+LP + +CK K G HK+ + +T
Sbjct: 416 KRKSKRQSIASKGELHVHIMEAKNLPGKDADGMSDPFCKITLLPDKKGKTRHKTAIIKRT 475
Query: 382 -KPAWCERFNIYLYEENN--------LEVSLW 450
P+W +N+ +YEE + LE+S+W
Sbjct: 476 LNPSW--DYNL-IYEELSQEELRQRVLEISIW 504
>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
Length = 647
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 373 LKTKPAWCERFNIYLYEENNL 435
LK K A +RFN+++YEE +L
Sbjct: 512 LKMKKAGKDRFNVWMYEEQDL 532
>SB_37036| Best HMM Match : Cu_bind_like (HMM E-Value=5.5)
Length = 125
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 358 KSRQVLKTKP--AWCERFNIYLYEENNLEVSLWHKGKQKNFMGRCVIDLSRLEKKRLTI 528
+ R ++K K WC NI + E + E + H G +N GR I L K+RL +
Sbjct: 66 EKRTLIKGKDMRVWCSTKNI-VTERDGYERTEGHHGWTRNLDGRTFILRDMLPKRRLCL 123
>SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 265 IVLIEAKDLPDDQTTTCNGLYCK 333
++ I+ KDLP Q T+C G C+
Sbjct: 562 VLRIKTKDLPSTQITSCTGPSCR 584
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 394 CERFNIYLYEENNLEVSLWHKGKQKNFMGRCVIDLSRLEKKRLTIFGRNWNV 549
CERFNIY+Y + E+ HK + F G+ +R+EK L + N+ V
Sbjct: 1487 CERFNIYVYGQ-EFELETDHKPLECIF-GKTSKPSARIEKWVLRLQIYNYKV 1536
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 68 FRSFPIPDGFGMDPMVPNTL 127
FR +P+P+ G+DP +P T+
Sbjct: 1690 FRIYPLPEAEGVDPDLPETV 1709
>SB_55549| Best HMM Match : zf-C2H2 (HMM E-Value=0.79)
Length = 578
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 467 FCFPLCHKDTSKLFSSYKYILNLSH 393
FC P CH + SKL++ K+ L L H
Sbjct: 331 FCCPWCHVNCSKLYNLLKH-LKLCH 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,692,615
Number of Sequences: 59808
Number of extensions: 382428
Number of successful extensions: 1012
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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