Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00116
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z2Y2 Cluster: RNA helicase , putative; n=4; Plasmodiu...    36   0.98 
UniRef50_Q7VLI7 Cluster: Putative uncharacterized protein; n=2; ...    35   1.7  
UniRef50_Q16LB5 Cluster: ATP-binding cassette sub-family A membe...    33   9.1  

>UniRef50_Q4Z2Y2 Cluster: RNA helicase , putative; n=4; Plasmodium
           (Vinckeia)|Rep: RNA helicase , putative - Plasmodium
           berghei
          Length = 756

 Score = 35.9 bits (79), Expect = 0.98
 Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = -1

Query: 524 ILKKYLKIYGQHINM--KNKQNISLYINRILLNNEK 423
           I+KK  +IY  HIN+  KN +NI+  I+ ILLNN K
Sbjct: 157 IIKKRPEIYNPHINISEKNIENINKEIDNILLNNSK 192


>UniRef50_Q7VLI7 Cluster: Putative uncharacterized protein; n=2;
           Haemophilus ducreyi|Rep: Putative uncharacterized
           protein - Haemophilus ducreyi
          Length = 167

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/53 (30%), Positives = 32/53 (60%)
 Frame = +3

Query: 174 LFKEFFLVSRSLKSIFLLMQCKAIQHTTLVAIPCYLPSKPRRFQFVL*KKIFY 332
           LF++  +V+R+ K +F  ++    ++ TLV +P     KP+ F++   KK+F+
Sbjct: 37  LFRKCLIVNRTEKELFFKIRGAVPEYITLVQVPFSCIVKPKHFKYDQNKKLFW 89


>UniRef50_Q16LB5 Cluster: ATP-binding cassette sub-family A member 3,
            putative; n=2; Aedes aegypti|Rep: ATP-binding cassette
            sub-family A member 3, putative - Aedes aegypti
            (Yellowfever mosquito)
          Length = 1622

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +2

Query: 386  TVLTKVNYVCRLVSHCLVKFYLCKVKCSVCSSY*YAGHKFLNTFLK*NYIILIMRQSKII 565
            + +T  N +C L+ +C +   LCK     CS Y        N  L+    +L+   + ++
Sbjct: 1190 STVTTCNNLCNLLPNCTMDV-LCKQLPKCCSPYSDLFSFTSNGMLRELSFMLV---TGVV 1245

Query: 566  QSYLLWFMNFK*LHRIYVKLY 628
               L+W +  K LHR++ K+Y
Sbjct: 1246 CFLLIWAIERKLLHRLWAKVY 1266


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,524,564
Number of Sequences: 1657284
Number of extensions: 13254299
Number of successful extensions: 28765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28756
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)