Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00116
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   1.5  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.0  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   4.6  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   6.1  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    26   6.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   8.0  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 371 TLRAATVLTKVNYVCRLVSHCLVKFYLCKVKCSVCSSY 484
           ++ + +V  + N++  +  HC    +  + KCSVC  Y
Sbjct: 119 SVNSMSVSPQSNFMYAICDHCEQPIHNVRYKCSVCDDY 156


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 310 TNWNLLGFEGK*HGIATKVVCWI 242
           TN  LL   GK HG+ TK+VC+I
Sbjct: 643 TNLALLN-HGKLHGVLTKIVCFI 664


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 316 KKKFSTCKKIYLSIC 360
           K+KF T +KI+LS+C
Sbjct: 245 KRKFETAQKIFLSLC 259


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 517 FKIKLYHPNNASIKNHPILFIVV 585
           F ++LY P N+ I  H IL+I +
Sbjct: 52  FLMQLYAPKNSEISYHRILYIFI 74


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 460 HFT*IEFY*TMRNQPTNIVH--LGQYCSSPQCFLMDRWTDIF 341
           HF+ IE+   +R+  + +V+  +GQ CS  QC    R +  F
Sbjct: 208 HFSHIEWNLHLRSNKSIVVNNFVGQLCSRTQCMTCGRTSTTF 249


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 244 IALHC-INKKIDFKDRETRKNSLNK 173
           IA+ C I  +IDF ++E R  S+NK
Sbjct: 610 IAIACSIANRIDFLEKENRPKSVNK 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,968
Number of Sequences: 5004
Number of extensions: 64248
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)