Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00116
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...    29   2.7  
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841     29   2.7  
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    29   2.7  
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    29   2.7  
07_03_1451 - 26623913-26624123,26624504-26624593,26624691-266249...    29   4.8  

>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 682 FNPSSRTRLYNFNKYKIYV*FNVNSMELLKVH 587
           +    +TR Y  NK+K +V  NV+ +ELL +H
Sbjct: 58  YGSDKKTRHYLPNKFKKFVVHNVSELELLMMH 89


>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 682 FNPSSRTRLYNFNKYKIYV*FNVNSMELLKVH 587
           +    +TR Y  NK+K +V  NV+ +ELL +H
Sbjct: 58  YGSDKKTRHYLPNKFKKFVVHNVSELELLMMH 89


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 682 FNPSSRTRLYNFNKYKIYV*FNVNSMELLKVH 587
           +    +TR Y  NK+K +V  NV+ +ELL +H
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMH 411


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 682 FNPSSRTRLYNFNKYKIYV*FNVNSMELLKVH 587
           +    +TR Y  NK+K +V  NV+ +ELL +H
Sbjct: 125 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMH 156


>07_03_1451 -
           26623913-26624123,26624504-26624593,26624691-26624920,
           26625692-26625794,26625908-26626150,26626263-26626352,
           26626537-26626808
          Length = 412

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 174 LFKEFFLVSRSLKSIFLLMQCKAIQHTTLVAIPC-YLPSKPRR 299
           L+ + FL++R+   +   M+CK     + V +P  +LPS P R
Sbjct: 186 LYSKAFLINRTASPLAWFMECKDRTKRSSVMLPYNFLPSMPAR 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,532,578
Number of Sequences: 37544
Number of extensions: 314855
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)