Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00116
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)                 31   0.69 
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              29   3.7  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          29   3.7  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   3.7  
SB_25342| Best HMM Match : C1_1 (HMM E-Value=3.6)                      28   8.5  
SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_58511| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-22)
          Length = 327

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -3

Query: 426 ETSLQT*FTLVSTVAALNVF*WTDGQIYFFACRKFFFKEQTGIFLASKANNMGLQLK*YV 247
           E S+ + F  +  +A L +F  T+G + +F  +K + K  T I LAS A +  L     +
Sbjct: 19  EASIISAFAFLVVLAVLIIF--TNGSVIYFVIKKQYLKTPTNIILASLAASDVLAGALAI 76

Query: 246 GLLYIASIKKSI 211
            L+   + K S+
Sbjct: 77  PLIIACNFKYSV 88


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 682 FNPSSRTRLYN-FNKYKIYV*FNVNSM 605
           +NP ++  +YN FNK  +Y  FN+NS+
Sbjct: 778 YNPVNKNSVYNPFNKGSVYNPFNINSV 804


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 99  WGIKFINNRRPV-KIK-NTSALLVVYDSYVLDSIE 1
           WG K   +R PV K K  TSA L ++D Y+L S E
Sbjct: 18  WGTKPCEHREPVPKSKPRTSAYLCLHDDYILGSQE 52


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 560 FLIDALLG*YNFILKKYLKIYGQH 489
           FL + +LG Y++IL K  KIYG H
Sbjct: 540 FLRENILGKYHWILAKLKKIYGAH 563


>SB_25342| Best HMM Match : C1_1 (HMM E-Value=3.6)
          Length = 206

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 415 TNIVHLGQYCSSPQCFLMDRWTD 347
           T ++  G   S PQCF +DRW D
Sbjct: 162 TQLLLQGYTKSHPQCFSIDRWDD 184


>SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 371 TLRAATVLTKVNYVCRLVSHCLVKFYLCKVKCSVC 475
           T R +   T+VNY   LV++C ++   C ++ S C
Sbjct: 173 TSRVSYCGTRVNYCGILVNYCGIRVSYCGIRVSYC 207



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 296 KIPVCSLKKNFLHAKKYICP-SVH*KTLRAATVLTKVNYVCRLVSHCLVKFYLCKVKCSV 472
           ++  C ++ ++   +   C   V    +R +   T+VNY   LV++C ++   C ++ S 
Sbjct: 308 RVSYCGIRVSYCGTRVNYCGIRVSYCGIRVSYCGTRVNYCGILVNYCGIRVSYCGIRVSY 367

Query: 473 C 475
           C
Sbjct: 368 C 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,049,254
Number of Sequences: 59808
Number of extensions: 397022
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)