Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00116
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z49967-12|CAI70401.1|  396|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z49967-11|CAA90252.1|  442|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81047-6|CAB02833.2|  381|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical
           protein Y32H12A.7 protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 383 QPSMFSNGQMDRYIFLHVENFFLKNKLESSWLRRQI 276
           QP +F N    RY+FL + +F +    +S  +RR+I
Sbjct: 348 QPEIFENETFFRYLFLKIIDFEMLTARQSQAVRRRI 383


>Z49967-12|CAI70401.1|  396|Caenorhabditis elegans Hypothetical
           protein F54C9.6b protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 105 YLWGIKFINNRRPVKIKNTSALLVVYDS 22
           Y W + FINNR   + +N SA  VV+ +
Sbjct: 32  YPWLLDFINNRSATQTRNLSANTVVHQA 59


>Z49967-11|CAA90252.1|  442|Caenorhabditis elegans Hypothetical
           protein F54C9.6a protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 105 YLWGIKFINNRRPVKIKNTSALLVVYDS 22
           Y W + FINNR   + +N SA  VV+ +
Sbjct: 78  YPWLLDFINNRSATQTRNLSANTVVHQA 105


>Z81047-6|CAB02833.2|  381|Caenorhabditis elegans Hypothetical
           protein C41G6.8 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 128 CPKEISFIITMLKMLFIQRVFSRFSIFKIDFFIDAM*SN 244
           CP  +S I T   ++ + + F+ FS F + FF+ +   N
Sbjct: 310 CPDFVSAIYTAESLIAVLKTFNAFSHFFVCFFLSSQYRN 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,614
Number of Sequences: 27780
Number of extensions: 344105
Number of successful extensions: 768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)