Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00116
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    28   7.0  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    27   9.2  

>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 353 PSVH*KTLRAATVLTKVNYVCRLVSHCLVKFYLCKVKCS 469
           PSV  K ++++ +L   +   RL  + L KFYL  +K S
Sbjct: 517 PSVMHKNIKSSNILLDADLNPRLSDYGLSKFYLVSIKTS 555


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 260 SCNPMLFAFEAKKIPVCSLKKNFLHAKKYICPSVH*K 370
           S N    A E +K P C+   NF  A++  C S H K
Sbjct: 759 SSNSTETALEEEKCPYCAAPVNFHSAEEAFCESSHQK 795


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,643
Number of Sequences: 28952
Number of extensions: 297122
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)