Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00115
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 468 GKGGQVKRLVRSHSSHHP 521
           G GG+V  L  +H  H P
Sbjct: 397 GDGGEVAHLPNTHMGHEP 414


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 468 GKGGQVKRLVRSHSSHHP 521
           G GG+V  L  +H  H P
Sbjct: 345 GDGGEVAHLPNTHMGHEP 362


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 364 SLGMEGGACRSRTD*NLLSLNNQRPNL 444
           S+ M   + R R   NLL  +NQ+PN+
Sbjct: 225 SVPMSFSSPRRRHSINLLEEDNQKPNV 251


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 130 CPWIFCNKQTHRN 168
           C W+FC K+  R+
Sbjct: 347 CNWLFCGKRFTRS 359


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 493 KRFTCPPLPF 464
           KR TCP  PF
Sbjct: 229 KRLTCPKCPF 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,915
Number of Sequences: 336
Number of extensions: 2767
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)