Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00115
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.7  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    25   8.2  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   8.2  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   8.2  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 434 VQTSHETKLMKRQRGASEAFSAEPFL 511
           +Q+ HET ++KR R A + FS EP +
Sbjct: 28  LQSLHETIVLKRSRNA-QGFSLEPIM 52


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 167 FLWVCLLQKIQGHRPFLVLLVDHLPESVSKILIV 66
           FLW C L+ I   +P L   +D    S+S++L++
Sbjct: 82  FLWSCFLKPILSIQPKLSFFID---SSLSRLLLL 112


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 77  FLKHFQVSDQQVTLEKAGVPGFFVTNKPIE 166
           FL  F V D +  ++    P FF +++PIE
Sbjct: 383 FLPSFSVDDPRGDIDFIVTPSFFNSSQPIE 412


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 354 LPPFTGDGGRGMSESNRLKPPVSQQP 431
           L  FTGDG   + ++ ++  PV+++P
Sbjct: 45  LTKFTGDGDENLKKNIKVLVPVNEKP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,074
Number of Sequences: 5004
Number of extensions: 43634
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)