Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00115
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0407 - 21883009-21883950                                         33   0.17 
05_05_0392 + 24629528-24630442                                         31   0.68 
04_03_0865 + 20402711-20404057                                         30   1.6  
03_02_0453 + 8621605-8623332                                           29   3.6  
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447           29   3.6  
04_01_0358 - 4692079-4692567                                           28   4.8  
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83...    28   6.3  

>01_05_0407 - 21883009-21883950
          Length = 313

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 23/67 (34%), Positives = 29/67 (43%)
 Frame = +3

Query: 372 DGGRGMSESNRLKPPVSQQPTSKPRMRQNS*KGKGGQVKRLVRSHSSHHPPPRDAGPAIV 551
           DGG G     R   P  +QP S P  R NS  G G +  +L     +  PPP    P  +
Sbjct: 244 DGGGGAVVRWRSYRP--RQPRSLPMTRSNSFAGVGSRSLQLQGGGGASRPPPAADVPFHL 301

Query: 552 GATTTSP 572
           G T + P
Sbjct: 302 GRTASLP 308


>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +3

Query: 384 GMSESNRLKPPVSQQPTSK--PRMRQNS*KGKGGQVKRLVRS---HSSHHPPPRDAGPAI 548
           G +   + KPPV  +P  +  PR  Q +            R    H S  PPP+DAG + 
Sbjct: 214 GAASGPQRKPPVPPRPCGRASPRRAQETNSPASSTTTTQSRGPPPHCSSPPPPQDAGASA 273

Query: 549 VGA 557
            GA
Sbjct: 274 AGA 276


>04_03_0865 + 20402711-20404057
          Length = 448

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/77 (33%), Positives = 33/77 (42%)
 Frame = +3

Query: 357 PPFTGDGGRGMSESNRLKPPVSQQPTSKPRMRQNS*KGKGGQVKRLVRSHSSHHPPPRDA 536
           PP TG G   MS S R   P+          R+ S   +G  +KR+V S    H  P+ A
Sbjct: 235 PPETGGG---MSSSRRSLSPLFDPELLASIERELS--EEGAHIKRMVGSEKPKH--PKAA 287

Query: 537 GPAIVGATTTSPLGRQA 587
            PA+V      P G  A
Sbjct: 288 PPAMVAEGKCPPGGADA 304


>03_02_0453 + 8621605-8623332
          Length = 575

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
 Frame = -1

Query: 580 RPRGLV---VVAPTIAGPASR--------GGG*WEEWLRTKRFTCPPL 470
           R RGLV   ++AP IAG  SR        G   W +W+R   FT  PL
Sbjct: 434 RVRGLVERVILAPNIAGAVSRAYRGVDGEGRCGWGQWMRGSGFTAVPL 481


>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
          Length = 420

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 504 HSSHHPPPRDAGPAIVGATTTSPL 575
           H  HHPPP      ++ A+TT+PL
Sbjct: 235 HHHHHPPPPPPELQLLPASTTAPL 258


>04_01_0358 - 4692079-4692567
          Length = 162

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 399 NRLKPPVSQQPTSKPRMRQNS*KGKGGQVKRLVRSHSSHHPPPRDAGPAIVGATTTSPLG 578
           +R++PP S     +P + +     +GG+ + ++   +   P P  A P +    T+S L 
Sbjct: 76  SRIRPPTSMHQQIQPPLSRVDEGRRGGRDQAMMTRRTGPTPRPGRARPRLGRRVTSSSLA 135

Query: 579 RQ 584
            Q
Sbjct: 136 AQ 137


>06_01_0102 +
           834660-834911,835460-835568,835891-836006,836116-836235,
           836398-836436,836678-836811,837035-837299,837615-837698,
           837943-838003,838748-838810,839174-839216,839632-839711,
           839831-840267
          Length = 600

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 348 AGLPPFTGDGGRGMSESNRLKPP 416
           AG PP  G G RG S S+   PP
Sbjct: 3   AGAPPLAGVGDRGSSSSSSHPPP 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,990,315
Number of Sequences: 37544
Number of extensions: 345812
Number of successful extensions: 1076
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)