Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00115
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)                 46   2e-05
SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)                    28   4.9  
SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
          Length = 423

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/31 (61%), Positives = 27/31 (87%)
 Frame = +2

Query: 116 LEKAGVPGFFVTNKPIEIKVQMYLLDFILRL 208
           L++AGVP FFVTN P ++++QMYLL+FI +L
Sbjct: 388 LQRAGVPLFFVTNNPDDVRLQMYLLEFIQQL 418


>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
          Length = 571

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 348 AGL--PPFTGDGGRGMSESNRLKPPVSQQPTSKPRMRQNS*KGKGG 479
           AGL  PP +  GG   + SN + PP  QQP +  + ++   K KGG
Sbjct: 526 AGLSSPPGSPGGGATSAPSN-VVPPRQQQPAAAKKKQRPKGKKKGG 570


>SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 453 QNS*KGKGGQVKRLVRSHSSHHPPPRDA--GPA 545
           + S + +GG    ++ S  SH  PPRD+  GPA
Sbjct: 127 EGSFRDRGGSFAFVIESRKSHKVPPRDSMFGPA 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,186
Number of Sequences: 59808
Number of extensions: 352323
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)