Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00115
         (589 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   1.0  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    25   1.8  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    23   9.7  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 385 PRPPSPVKGGSP 350
           PRPP P++GG+P
Sbjct: 298 PRPPMPMQGGAP 309


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 357 PPFTGDGGRGMSESNRLKPPVSQQPTSKPR 446
           PP  GD    M  S   K P++  PT + R
Sbjct: 192 PPTPGDDSDSMGASRHGKTPLATPPTKEKR 221


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 398 EPTKTSCLSTTNVQTSHETKLMKRQRGASEAFSAEPFL 511
           +P K   + + +    H  +  +  R  SEA S  PFL
Sbjct: 818 DPQKLRIVVSKSANAMHPPRGSRHTRQGSEASSPPPFL 855


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,773
Number of Sequences: 2352
Number of extensions: 12715
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)