Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00115
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39651-1|AAA80393.2|  260|Caenorhabditis elegans Hypothetical pr...    32   0.35 
U39850-5|AAM45368.1|  670|Caenorhabditis elegans Polyq (poly glu...    28   4.3  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   4.3  
Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kin...    27   9.9  
U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon gu...    27   9.9  
U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon gu...    27   9.9  
AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr pro...    27   9.9  

>U39651-1|AAA80393.2|  260|Caenorhabditis elegans Hypothetical
           protein ZK470.2c protein.
          Length = 260

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 405 LKPPVSQQPTSKPRMRQNS*KGKGGQVKRLVRSHSSHHPPPRDAGPAI 548
           LK PVS  P  +   R+N  + K      L+   S H PP R +  AI
Sbjct: 78  LKTPVSSHPNLQSLRRENEFQDKNVSSAALLSQESLHQPPLRKSSSAI 125


>U39850-5|AAM45368.1|  670|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform c
           protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 390 SESNRLKP---PVSQQPTSKPRMRQNS*KGKGGQVKRLVRSHSSHHPPPRDAGPAIVGAT 560
           S  NR K    P++++PTS   +  N   G     KR+  +H+S  P P  + P ++GA 
Sbjct: 101 SSENRAKEKQKPMNKRPTSSASVDSND-DGVHIPAKRM--AHASSVPGPSRSKPPMIGAV 157

Query: 561 TTSP 572
              P
Sbjct: 158 KNRP 161


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
            glutamine tract) toxicityenhancer protein 1, isoform b
            protein.
          Length = 1647

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 390  SESNRLKP---PVSQQPTSKPRMRQNS*KGKGGQVKRLVRSHSSHHPPPRDAGPAIVGAT 560
            S  NR K    P++++PTS   +  N   G     KR+  +H+S  P P  + P ++GA 
Sbjct: 1078 SSENRAKEKQKPMNKRPTSSASVDSND-DGVHIPAKRM--AHASSVPGPSRSKPPMIGAV 1134

Query: 561  TTSP 572
               P
Sbjct: 1135 KNRP 1138


>Z34989-1|CAA84441.1|  404|Caenorhabditis elegans Ndr protein kinase
           protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 450 SCEVWTLVVERQEVLVGSTPTCPALHPQ 367
           SC+ W+L V   E+L+G  P C  L PQ
Sbjct: 242 SCDWWSLGVIMYEMLIGYPPFCSEL-PQ 268


>U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform a protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 450 SCEVWTLVVERQEVLVGSTPTCPALHPQ 367
           SC+ W+L V   E+L+G  P C  L PQ
Sbjct: 300 SCDWWSLGVIMYEMLIGYPPFCSEL-PQ 326


>U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform b protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 450 SCEVWTLVVERQEVLVGSTPTCPALHPQ 367
           SC+ W+L V   E+L+G  P C  L PQ
Sbjct: 300 SCDWWSLGVIMYEMLIGYPPFCSEL-PQ 326


>AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr
           protein kinase protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 450 SCEVWTLVVERQEVLVGSTPTCPALHPQ 367
           SC+ W+L V   E+L+G  P C  L PQ
Sbjct: 293 SCDWWSLGVIMYEMLIGYPPFCSEL-PQ 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,533
Number of Sequences: 27780
Number of extensions: 271180
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)