Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00115
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -1

Query: 409 FSRFDSDMP-RPPSPVKGG 356
           F  FD D P  PP P++GG
Sbjct: 366 FVTFDLDEPLPPPPPIRGG 384


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 90  KCFKNINCDADC 55
           +C K  NCD DC
Sbjct: 473 ECNKRCNCDIDC 484


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 384 GMSESNRLKPPVSQQPTSKPRMR 452
           G S+ +   PP    P  K RMR
Sbjct: 375 GRSQKSTTGPPPGPTPAQKARMR 397


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 533 VPRGRVMGGMAPH*TLHLPPFAFS*VLSHARFGR 432
           +P+ RV+G    H T+HL    +S +    +F R
Sbjct: 185 LPQFRVLGHRQRHSTIHLSTGNYSRLACEIQFVR 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,770
Number of Sequences: 438
Number of extensions: 3184
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)