Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00114
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   2.6  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.4  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   7.9  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -2

Query: 241 LSCQG*SLFLLPSNRRGVAALYQSGSSQGGTYRSRVLGSTDTTGPHL----CRSLAQRRL 74
           LS    SL ++P N  GV+ LY       G Y   V+   D T   L     R L  R +
Sbjct: 661 LSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAV 717

Query: 73  PILPLTV 53
            I P+T+
Sbjct: 718 KIYPITM 724


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 25  TSSSPSQVKTXXXXXXXXXXXXDYDTNEDLLYPYSPTPYFG 147
           T++SP   ++            +YD+    +YPY P P+ G
Sbjct: 448 TANSPIAYQSYSVMPTYWSFPQNYDSTVPAVYPYMPPPFSG 488


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 292 RATIRESKYPTGSPSCLWTTATLPVTSGTTAS 387
           R  + E+KYPT SP+   +  + P   GTTA+
Sbjct: 246 RRLLLEAKYPTVSPTNEPSAHSRPSPQGTTAN 277


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 283 SSVRATIRESKYPTGSPSCLWT--TATLPVTSGTTASKLLPSARGQSLSGALQTSPGSST 456
           +S   T   S  PTG  S L T  T T+P TS ++ S  +P     S        P +ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 377 VPDVTGSVAVVHRHDGDPVGYLLSLIVA 294
           +PD+TG VA+V    G  +GY+ +L +A
Sbjct: 37  IPDLTGKVALVTGSSGG-IGYVTALELA 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,971
Number of Sequences: 5004
Number of extensions: 54595
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)