Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00114
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 2.0
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 4.6
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 29 4.6
02_05_1113 + 34207997-34208380 29 4.6
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 28 6.1
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 28 6.1
08_02_0782 - 21164425-21164558,21164652-21165067,21165160-21165344 28 6.1
07_03_0154 + 14509979-14512033 28 8.1
05_04_0364 + 20658219-20658416,20658475-20658543 28 8.1
03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948 28 8.1
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 366 NWKCRCRPQTRRGSCWVF 313
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 311 ANTQQDPRRVCGRQRHFQLHQGRQRQNCYHQHGANH 418
+N ++ PRR GR R GR R YHQH NH
Sbjct: 359 SNDKEGPRRGRGRGRG-----GRGRGRGYHQHNNNH 389
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 361 PVTSGTTASKLLPSARGQSLSGALQTSPGSS 453
P +GT+A LLPS G + S ++Q + GS+
Sbjct: 303 PPAAGTSAGPLLPSGGGATGSASVQATGGSA 333
>02_05_1113 + 34207997-34208380
Length = 127
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 549 WSRVRTARRLEDPDGIQHEEGLCRR 623
W R RTARR DG EEG C R
Sbjct: 45 WRRSRTARRTPVADGDGSEEGGCGR 69
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 407 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYLLSLIVALTDERKLF 270
+ DGNSF +PD TG + +H D G L + L + ++ F
Sbjct: 439 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKEFF 486
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 407 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYLLSLIVALTDERKLF 270
+ DGNSF +PD TG + +H D G L + L + ++ F
Sbjct: 442 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKEFF 489
>08_02_0782 - 21164425-21164558,21164652-21165067,21165160-21165344
Length = 244
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 624 CVGKDPLRAEFRLGPQVCGQFVPGSIV*ALFTKLTLE 514
CV +DP+ + L P CG PGS+ L + TLE
Sbjct: 158 CVNQDPIFKSYSLPPHECG--YPGSVFNPLNFEPTLE 192
>07_03_0154 + 14509979-14512033
Length = 684
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 352 ATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKTRR 474
ATL ++S A ++P+A ++ +GA+ PGS + K RR
Sbjct: 112 ATLYLSSAGAAGVIVPAAAPEASAGAV-AQPGSGSGAKKRR 151
>05_04_0364 + 20658219-20658416,20658475-20658543
Length = 88
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 346 TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKTRR 474
+T LPV +++ SAR L L PG S RP + R
Sbjct: 12 STCRLPVMKSRHPTRIAQSARPTQLPETLTLQPGRSGRPVSYR 54
>03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948
Length = 401
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 283 SSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKL--LPSARGQSLSGALQTSPGSST 456
SSV A + P+ PS L+ T++LP + A+K + + SG + P ++
Sbjct: 59 SSVAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDELNCRRPSGGAEAEPAAAR 118
Query: 457 RP 462
P
Sbjct: 119 LP 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,534,178
Number of Sequences: 37544
Number of extensions: 398652
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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