Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00114
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 2.7
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072) 29 4.7
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 28 6.2
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45) 28 8.3
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 346 TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKTR 471
+T + P+T GT ++ PSA G ++ + ++P + + P TR
Sbjct: 157 STPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTR 198
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 346 TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKTR 471
+T + P+T GT ++ PSA G ++ + ++P + + P TR
Sbjct: 707 STPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTR 748
>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 283 SSVRATIRESKYPTGSPSCLWTT-ATLPVTSGTTASKLLPS 402
S++ + +K TG P+C WT+ +TL +T+GT+A+ ++PS
Sbjct: 473 SAILDSATVAKLGTG-PTCSWTSKSTLVITTGTSAT-IMPS 511
>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 163 KIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQATM*TNSLRSSVRATI----RESKYP 321
++P GR HV EG++ NLG G P M +NS + V A I R KYP
Sbjct: 331 ELPNGR----HVVLLAEGRLVNLGCAMGHPSFVM-SNSFTNQVLAQIELWTRHEKYP 382
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 238 IRGFPQATM*TNSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQS 417
+ P ++ N SSV TI + PT SPS TT+++ T A+ + + ++
Sbjct: 725 VNATPTISLSPNGTTSSVYETIAVNATPTISPSPNGTTSSVYETIAVNATPSISLSTNET 784
Query: 418 LSGALQTSPGSST 456
S +T +ST
Sbjct: 785 ASSPYETIAVNST 797
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 238 IRGFPQATM*TNSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLL-PSARGQ 414
+ P + N SSV TI + PT SPS TT+++ T A+ ++ PS G
Sbjct: 564 VNSTPSISPSPNGTTSSVYETIAVNATPTISPSPNGTTSSVYETIAVNATPIISPSPNGT 623
Query: 415 SLS 423
+ S
Sbjct: 624 TSS 626
>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +1
Query: 271 NSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGS 450
+S +S A + + T + + +T L +T S S + LSG+L P +
Sbjct: 194 SSFKSFTAANKPQKSHSTMESNVVLSTTFLLSHLVSTPSDFSTSTSHEILSGSLLVEPSA 253
Query: 451 STRPKTRRCLR 483
+T KT C R
Sbjct: 254 ATNTKTSPCTR 264
>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
Length = 2374
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 268 TNSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPG 447
TN ++ V+ +++S++P S T T +S +LPS + A QT G
Sbjct: 2190 TNQVQQPVQEVVKDSRFPVSSLEASGGAMTSSSQEDTRSSSILPSPPSVAFQ-AKQTLSG 2248
Query: 448 SSTRPKTR 471
+++ R
Sbjct: 2249 ETSQLNLR 2256
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 271 NSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGS 450
N SSV TI P+ SPS TT+++ VT ++ + + ++ S A +T +
Sbjct: 463 NGTTSSVYETIDVKSTPSISPSPNGTTSSMYVTIAVNSTTSISPSLNETTSSAYETIAVN 522
Query: 451 ST 456
+T
Sbjct: 523 AT 524
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 56 RQRKNGKPPLSQTTTQMRTCC 118
++RK P LSQ+ TQ+ +CC
Sbjct: 787 KRRKTPAPALSQSATQLASCC 807
>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
Length = 480
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 109 PHLCRSLAQRRLPILPLTVFLPVK 38
P +CRS+ P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,104,775
Number of Sequences: 59808
Number of extensions: 452597
Number of successful extensions: 1359
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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