Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00114
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet... 32 0.31
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain... 31 0.55
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 29 2.2
At4g18370.1 68417.m02724 protease HhoA, chloroplast (SPPA) (HHOA... 29 3.9
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 28 5.1
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 28 6.8
At1g54510.1 68414.m06217 protein kinase family protein contains ... 28 6.8
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat... 27 8.9
At2g34350.1 68415.m04204 nodulin-related weak similarity to nodu... 27 8.9
>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
acetyl-CoA carboxylase-related contains weak similarity
to Biotin carboxyl carrier protein of acetyl-CoA
carboxylase, chloroplast precursor (BCCP)
(Swiss-Prot:Q42533) [Arabidopsis thaliana]
Length = 263
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -1
Query: 371 DVTGSVAVVHRHDGDPVGY---LLSLIVALTDERKL 273
DVTG V + R DG+PVGY L+S++ + +KL
Sbjct: 227 DVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262
>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
protein similar to SP|Q06881 Biotin carboxyl carrier
protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
contains Pfam profile PF00364: Biotin-requiring enzyme
Length = 274
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 380 VVPDVTGSVAVVHRHDGDPVGYLLSLIVAL 291
V DV+G + + R DG+PVGY +LI L
Sbjct: 235 VESDVSGEIVKILREDGEPVGYNDALITVL 264
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +1
Query: 292 RATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKTR 471
+A++ ++ T +P+C+ T PV S ++ PS S+S +S G+STR TR
Sbjct: 404 QASLAATRTSTSAPACI----TSPVKSRLKITRK-PS-ESTSISPVFMSSLGNSTRKITR 457
Query: 472 RCLR 483
+ LR
Sbjct: 458 KALR 461
>At4g18370.1 68417.m02724 protease HhoA, chloroplast (SPPA) (HHOA)
identical to SP|Q9SEL7 Protease HhoA, chloroplast
precursor (EC 3.4.21.-) {Arabidopsis thaliana}
Length = 323
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 301 IRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQT 438
+ +S + G+P T T+ V SG + +PS G+S+S A+QT
Sbjct: 214 VGQSCFAIGNPYGYENTLTIGVVSGL--GREIPSPNGKSISEAIQT 257
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 100 TNEDLLYPYSPTPYFGMYHLVKIPIGRG 183
T EDL+ P+S FG VKIP+G+G
Sbjct: 339 TEEDLMQPFSD---FGEVVSVKIPVGKG 363
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 560 TNCPQT*GPRRNSARRGSLPTQVQSTITCTT 652
TNCP RNS + P +ST++C T
Sbjct: 778 TNCPSRVPASRNSRPTATNPRNDESTVSCNT 808
>At1g54510.1 68414.m06217 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 612
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 361 PVTSGTTASKLLPSARGQSL 420
PV+ G T SK++PSAR SL
Sbjct: 388 PVSGGGTTSKIIPSARRTSL 407
>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
similar to to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 853
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 199 RRGVAALYQSGSSQGGTYRSRVLGSTDTTGPHLC 98
RRG A Q+ SS G +R L S D+TG C
Sbjct: 43 RRGEARALQAPSSWYGLISARTLCSIDSTGTFSC 76
>At2g34350.1 68415.m04204 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 525
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 632 IELASAKTLFVLNSVWVLKSAGSSYPAP*YKPFLPSSRS 516
+E A+ K + S+W+ +G+SY Y L SS+S
Sbjct: 1 MEFANTKWVAAAASIWIQSFSGASYTFGIYSSVLKSSQS 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,161
Number of Sequences: 28952
Number of extensions: 302497
Number of successful extensions: 877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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