Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00113
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   6.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   8.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   8.8  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 437 PSSERPQRTRVETTNSPAGSRLPSVSTS 354
           PS   PQ +    + SPA    P VS +
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAA 67


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 437 PSSERPQRTRVETTNSPAGSRLPSVSTS 354
           PS   PQ +    + SPA    P VS +
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAA 67


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 298 EDYHNGFKKTDKHPPKNWGDVDTLGN 375
           ED H  F+    H P  W +++T  N
Sbjct: 79  EDVHKVFQHLMIHRPNWWHELETKFN 104


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 439 YPFNPCLTESQYK 477
           +PF+PC   + YK
Sbjct: 61  FPFSPCNNTANYK 73


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 240 IPTPESKFSTPDWMQSRRVDP 178
           +P P+    T  WMQ +R  P
Sbjct: 187 VPQPQPVLPTYKWMQVKRNVP 207


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 240 IPTPESKFSTPDWMQSRRVDP 178
           +P P+    T  WMQ +R  P
Sbjct: 187 VPQPQPVLPTYKWMQVKRNVP 207


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 240 IPTPESKFSTPDWMQSRRVDP 178
           +P P+    T  WMQ +R  P
Sbjct: 187 VPQPQPVLPTYKWMQVKRNVP 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,374
Number of Sequences: 336
Number of extensions: 2659
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)