Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00113
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.8  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   5.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.4  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.2  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   7.2  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.5  

>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 169 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 41
           LFV+  VEY PG  L    LR GS    +T+ +FL    CG+++C
Sbjct: 83  LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 292 IIEDYHNGFKKTDKHPPKNW 351
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 159 RTKRPHSDPPSLTASNRVSRTWTP 230
           R  RP  +PP L+ASN    T  P
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPP 414


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 174 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 22
           E + F RL  T    +F S + E      L  AS  S+VAA  I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 518 GRAQGHVLPPHRHVEGDPAAAHRRPLPVQGG 610
           GR Q  VLP       DPAA   +PLP + G
Sbjct: 513 GRCQSMVLPIMNKWTVDPAAKDVKPLPRKVG 543


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 373 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 495
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 144 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 28
           +SLV++     ++     +LKP + F  V A   VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 129 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTP 230
           TLP   +T  +T R  + PPS   SNR +  + P
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRP 488


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 337 PPKNWGDV 360
           PPKNWGDV
Sbjct: 521 PPKNWGDV 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,014
Number of Sequences: 5004
Number of extensions: 44544
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)