Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00113
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 32 0.34
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 29 2.4
03_05_0447 - 24421442-24422767 29 2.4
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 3.2
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 29 4.2
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 5.6
12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547 28 7.4
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 28 7.4
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 7.4
07_03_0439 + 18212584-18213065,18214164-18215010 27 9.8
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 27 9.8
03_05_0908 + 28686855-28687328 27 9.8
02_05_0385 - 28506326-28506891,28506993-28507405,28507496-285077... 27 9.8
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -3
Query: 524 LALEADRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQF 345
+ L+A+ P + +Y ++ G+ GY S PQ ++ R+P+ T F
Sbjct: 190 MILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYNYVVSTNKSKRVPTTVT---F 246
Query: 344 LGGCLSVFLK 315
GC S+F++
Sbjct: 247 TNGCFSIFVQ 256
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 23 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 199
S K + + + +++ + G F K D S + K+ TRE+ D+ K + +LDC
Sbjct: 94 SVWKGGMIKEYSKMDECKTGDFGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDC 153
Query: 200 I 202
+
Sbjct: 154 V 154
>03_05_0447 - 24421442-24422767
Length = 441
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 DGCSSARKAATMVDAATLEKLEAGFSKLQG-SDSK 112
DGC S+ ++ AA L +LEAG K G SD++
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTGDSDAR 97
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 183 DPNEVFLFFRLSNTSLVRYFFSSDLE-SDPWSLLKPASNFSRVAASTIVAAFLA 25
D +++ L + LV YF+ SD SLL SNF+R+A+ + ++ F++
Sbjct: 139 DASKLALKHTRAGAPLVAYFWDKTFAWSDASSLLPFCSNFTRLASQSTMSGFVS 192
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 71 LEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTL-LDCIQSGVENLDSGVGIYA 247
L AG +KL SDS+S +K+ +FD LK+ F + + ++S + L S +
Sbjct: 1269 LLAGLAKLT-SDSRSTIKRSAVGVLFDILKDHGQLFSESFWTNILESVIYPLFSSERSSS 1327
Query: 248 PDASRTPCSP 277
D + TP P
Sbjct: 1328 NDPTSTPSIP 1337
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 428 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 321
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547
Length = 359
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 438 VPLQPLPH-RVPVQGDGG-QGLRHPVSLEGELKGTFYPLTG 554
VP L H R ++GDG + LRHPV + L +PL G
Sbjct: 87 VPFHRLGHVRPSLEGDGVVEPLRHPVPIPLRLGRVHWPLVG 127
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 23 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 199
S K + + + +++ + G F K D S + K+ TRE D+ K + +LDC
Sbjct: 326 SVWKGGMIKEYSKIDECKTGDFGKRPLIDDISTVCKWFTREHSDTTYGKNAQLAAKVLDC 385
Query: 200 I 202
+
Sbjct: 386 V 386
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 237 PTPESKFSTPDWMQS 193
P PE+K TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = -3
Query: 485 SISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVST 357
++S +WD+ +G ++ P R +TN P+ + + T
Sbjct: 29 TVSTHWDAASHEARGAAAASSPTSPRAASTNPPSATSAEPLHT 71
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 512 ADRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLG 339
AD +PET +++S + VR Y P ++SPA S + SPQ+LG
Sbjct: 168 ADHIPETPNNLSE--EMVRCMAGVYCKLADPPLVHHRASSSPASSFSSTSVVSPQYLG 223
>03_05_0908 + 28686855-28687328
Length = 157
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 40 NNGRRRNPREIGGWFQQAPG 99
++G R +PRE+ GWF A G
Sbjct: 26 SHGARPSPRELQGWFAAAAG 45
>02_05_0385 -
28506326-28506891,28506993-28507405,28507496-28507743,
28507820-28508480,28508572-28509498,28509588-28509847,
28509943-28510143,28515547-28515633,28516200-28516375,
28516465-28516519,28516623-28516910
Length = 1293
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 557 HAGEGVERALELALEADRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGS 378
+ GE L + + + + +IS + +R YP + +R V +S AG
Sbjct: 340 NGGESFTTMLNVVIAGLSLGQAAPNISTF---LRARTAAYPIFQMIERNTVNKASSKAGR 396
Query: 377 RLPSVSTSPQF 345
LPSV QF
Sbjct: 397 TLPSVDGHIQF 407
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,168,458
Number of Sequences: 37544
Number of extensions: 369987
Number of successful extensions: 1593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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