Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00113
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65580.1 68418.m08251 expressed protein                             30   1.5  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    30   1.5  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    30   1.5  
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.5  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   3.5  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   3.5  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   4.7  

>At5g65580.1 68418.m08251 expressed protein 
          Length = 102

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 474 QGDGGQGLRHPVSLEGELKGTFYPLTGMSKE 566
           Q DGG G R    L GE+KG  +PLT M +E
Sbjct: 68  QTDGGDGERER-RLRGEVKGFSFPLTTMVEE 97


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 30  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTA 200
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTS 85


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 30  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTA 200
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTS 85


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 307 HNGFKKTDKHPPKNWGDVDTLGNLDPA 387
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 337 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 489
           PP  +G  D++TL   + AG++V  + +  G+  EG+ F P    + Y   E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,504
Number of Sequences: 28952
Number of extensions: 256061
Number of successful extensions: 967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)