Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00112
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             111   5e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           99   3e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 82   5e-16
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.38 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)                      28   8.2  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  111 bits (267), Expect = 5e-25
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +2

Query: 263 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 442
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 443 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 541
           TREHA+L  +LGV QLIV +NK   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 42/83 (50%), Positives = 60/83 (72%)
 Frame = +2

Query: 260 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 439
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 440 QTREHALLAFTLGVKQLIVGVNK 508
           QTREHA+LA T GVK L++ VNK
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNK 291



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = +3

Query: 132 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 254
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK 206



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +1

Query: 505 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 600
           +MD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 48  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 194
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = +2

Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 370
           ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 23  ITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 192 MGKGSFKYAWVLDKLKAERER 254
           MGKGSFKYAWVLDKLKAERER
Sbjct: 1   MGKGSFKYAWVLDKLKAERER 21


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 305 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 48  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 143
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 299 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 314 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 493
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 494 VGVNK 508
           +  NK
Sbjct: 123 ILQNK 127


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
           I++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 65  ISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 311 IIDAPGHRDFIKNMITGTSQADCAVLIV 394
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 400
           IT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 63  THINIVVIGHVDSGKSTTTGHLIY 134
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +3

Query: 72   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 252  R 254
            R
Sbjct: 1987 R 1987


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 514  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 654
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 687 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 577
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 120 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERVSQSILLSGSSKLAS 299
           GH      G    T    E + ++M K  F Y ++LDK   E ++ SQ I     + + S
Sbjct: 389 GHSTTSKDGALAETKIATEDKVKKMEKVLFDYRFLLDKSNFELQQHSQHIEAVRKNAVES 448

Query: 300 TMLPSLMLLD--TEISSRT 350
                + L D  TE+ S+T
Sbjct: 449 ITSAIIKLKDFQTEVESKT 467


>SB_16092| Best HMM Match : FixQ (HMM E-Value=2.5)
          Length = 250

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 147 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERVSQSI--LLSGSSKLASTMLPSLM 320
           IDK T  K+EK+  E  K   K A++ DK   + + V  +I  L   +  L + +LP+ +
Sbjct: 81  IDKATDAKYEKQNNEADK--TKGAFISDKESVKEDEVPDNIAELQQEAKDLDTIVLPTEV 138

Query: 321 LLDTE 335
             D E
Sbjct: 139 NKDVE 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,968,461
Number of Sequences: 59808
Number of extensions: 464034
Number of successful extensions: 1389
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)