Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00112
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 171 3e-43
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 164 6e-41
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 164 6e-41
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 148 4e-36
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 101 5e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 71 8e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 71 8e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 2e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 2e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 2e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.005
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 35 0.063
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.083
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.34
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.78
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.78
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.78
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 1.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 1.0
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.8
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 30 1.8
Z81139-5|CAB03481.2| 359|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.4
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.4
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.4
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.4
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.4
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.6
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 27 9.6
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 27 9.6
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.6
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 171 bits (417), Expect = 3e-43
Identities = 96/144 (66%), Positives = 101/144 (70%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 437 GQTREHALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLS 616
GQTREHALLA TLGVKQL + L T SPD +SRR T Q L
Sbjct: 131 GQTREHALLAQTLGVKQL-------VSLRSPTRSPD----------SSRRSDTIQRLFHL 173
Query: 617 CPFLDGTETTCWSLQPKCLGSRDG 688
D TETTC C GSRDG
Sbjct: 174 SQSPDSTETTCLRSPRTCHGSRDG 197
Score = 148 bits (358), Expect = 4e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERER 254
DKLKAERER
Sbjct: 61 DKLKAERER 69
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 164 bits (398), Expect = 6e-41
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 437 GQTREHALLAFTLGVKQLIVGVNK 508
GQTREHALLA TLGVKQLIV NK
Sbjct: 131 GQTREHALLAQTLGVKQLIVACNK 154
Score = 148 bits (358), Expect = 4e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERER 254
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 106 bits (254), Expect = 2e-23
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1
Query: 505 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 684
+MDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKG
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 213
Query: 685 W 687
W
Sbjct: 214 W 214
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 164 bits (398), Expect = 6e-41
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKN
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKN 130
Query: 437 GQTREHALLAFTLGVKQLIVGVNK 508
GQTREHALLA TLGVKQLIV NK
Sbjct: 131 GQTREHALLAQTLGVKQLIVACNK 154
Score = 148 bits (358), Expect = 4e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERER 254
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 106 bits (254), Expect = 2e-23
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1
Query: 505 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 684
+MDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKG
Sbjct: 154 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 213
Query: 685 W 687
W
Sbjct: 214 W 214
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 148 bits (358), Expect = 4e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAERER 254
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 106 bits (254), Expect = 2e-23
Identities = 46/61 (75%), Positives = 52/61 (85%)
Frame = +1
Query: 505 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 684
+MDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKG
Sbjct: 120 KMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 179
Query: 685 W 687
W
Sbjct: 180 W 180
Score = 99 bits (238), Expect = 1e-21
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 397
ITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 227
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 228 DKLKAER 248
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (272), Expect = 1e-25
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 234 VTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENG 293
Query: 437 GQTREHALLAFTLGVKQLIVGVNK 508
GQT+EHALL +LGV QLIV VNK
Sbjct: 294 GQTKEHALLLRSLGVTQLIVAVNK 317
Score = 85.0 bits (201), Expect = 5e-17
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = +3
Query: 57 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 237 KAERER 254
+ ERER
Sbjct: 227 EEERER 232
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +1
Query: 529 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 684
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 372
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (272), Expect = 1e-25
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G
Sbjct: 252 VTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENG 311
Query: 437 GQTREHALLAFTLGVKQLIVGVNK 508
GQT+EHALL +LGV QLIV VNK
Sbjct: 312 GQTKEHALLLRSLGVTQLIVAVNK 335
Score = 85.0 bits (201), Expect = 5e-17
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = +3
Query: 57 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 236
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 237 KAERER 254
+ ERER
Sbjct: 245 EEERER 250
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +1
Query: 529 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 684
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 390
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 101 bits (242), Expect = 5e-22
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +2
Query: 260 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 439
T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 440 QTREHALLAFTLGVKQLIVGVNK 508
QTREH++L T GVK L++ VNK
Sbjct: 234 QTREHSMLVKTAGVKHLVILVNK 256
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +3
Query: 51 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 230
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 231 KLKAERER 254
ERE+
Sbjct: 164 TNDEEREK 171
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 505 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KMPW 675
+MD + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T + W
Sbjct: 256 KMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEGNW 315
Query: 676 FKG 684
+ G
Sbjct: 316 YSG 318
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 94 ITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------ 147
Query: 437 GQTREHALLAFTLGVKQLIVGVNK 508
QT+EH +LA +GVK + + +NK
Sbjct: 148 -QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 60 KTHINIVVIGHVDSGKSTTT 119
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 94 ITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------ 147
Query: 437 GQTREHALLAFTLGVKQLIVGVNK 508
QT+EH +LA +GVK + + +NK
Sbjct: 148 -QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 60 KTHINIVVIGHVDSGKSTTT 119
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 151
Query: 437 GQTREHALLAFTLGV--KQLIVGVNK 508
QTREH LLA +GV ++V +NK
Sbjct: 152 -QTREHLLLARQVGVPLDNIVVFMNK 176
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 54 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 224
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 225 LDKLKAER 248
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 152
Query: 437 GQTREHALLAFTLGV--KQLIVGVNK 508
QTREH LLA +GV ++V +NK
Sbjct: 153 -QTREHLLLARQVGVPLDNIVVFMNK 177
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 54 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 224
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 225 LDKLKAER 248
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKN 436
ITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------ 152
Query: 437 GQTREHALLAFTLGV--KQLIVGVNK 508
QTREH LLA +GV ++V +NK
Sbjct: 153 -QTREHLLLARQVGVPLDNIVVFMNK 177
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 54 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 224
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 225 LDKLKAER 248
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +2
Query: 305 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 484
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 485 QLIVGVNKWIPLNHHTVSPDLRKSRR 562
++I+ +NK +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 69 INIVVIGHVDSGKSTTT 119
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 ITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 433
IT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 189 ITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE----- 243
Query: 434 NGQTREHALLAFTLGVKQLIVGVNK 508
QT + A V QL+V VNK
Sbjct: 244 --QTAQSIKFAKDANV-QLVVAVNK 265
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 34.7 bits (76), Expect = 0.063
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 513 IHLFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 379
++LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 11 LNLFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGI 149
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGID 152
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
ITI A + + IID PGH DF + D AVL++ G G
Sbjct: 98 ITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 143
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 260 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 48 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 143
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 260 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 72 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 188
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +2
Query: 299 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 478
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 479 VKQLIVGVNK 508
+ Q+I +NK
Sbjct: 155 I-QIIPVINK 163
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 24 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 134
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 24 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 134
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 302 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 481
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 482 KQLIVGVNK 508
L++ NK
Sbjct: 182 NHLMILQNK 190
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 263 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 263 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 311 IIDAPGHRDFIKNMITGTSQADCAVLIV 394
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 29.9 bits (64), Expect = 1.8
Identities = 33/123 (26%), Positives = 54/123 (43%)
Frame = +2
Query: 275 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 454
++KFE+S + +T + K ITGT VL+V+ +F K+ Q
Sbjct: 104 VYKFESSLHRLTFGLTKSRTEDYKTKITGTLGKLQIVLVVSEAFWKFLNKRYKSAQIFFA 163
Query: 455 ALLAFTLGVKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLDG 634
F L + + I + W L+ H+ + RKS YP+ A TQ++S +D
Sbjct: 164 FFPNFQLKILECIWHI--WATLDRHSATAVYRKS---YPNA----APTQIVSRRGVLMDL 214
Query: 635 TET 643
+T
Sbjct: 215 AKT 217
>Z81139-5|CAB03481.2| 359|Caenorhabditis elegans Hypothetical
protein W05H5.6 protein.
Length = 359
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 207 FKYAWVLDKLKAERERVSQSILLSGSSKLASTMLPSLMLLDTEISS 344
+ Y+W+ L ERV S+L+ ++P+++L+ ++ S
Sbjct: 134 YMYSWIFGVLTVAVERVIASVLIENYESNTQNLMPAILLIISQFLS 179
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 150 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 150 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 251
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 569 PHTSRRLATTQLLSLSCPFLD 631
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 569 PHTSRRLATTQLLSLSCPFLD 631
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 569 PHTSRRLATTQLLSLSCPFLD 631
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 569 PHTSRRLATTQLLSLSCPFLD 631
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 69 INIVVIGHVDSGKSTTT 119
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 305 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 400
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 305 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 394
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 305 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 394
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 479 VKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLS 610
V ++ G+N IP+ + P L S+++YP +R + +LL+
Sbjct: 134 VTKVTAGLNGGIPILTTSGMPSLLNSKKEYPFLTRMQGSYRLLA 177
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 479 VKQLIVGVNKWIPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLS 610
V ++ G+N IP+ + P L S+++YP +R + +LL+
Sbjct: 134 VTKVTAGLNGGIPILTTSGMPSLLNSKKEYPFLTRMQGSYRLLA 177
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -3
Query: 490 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 332
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 331 VSRSINDGNI 302
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,242,583
Number of Sequences: 27780
Number of extensions: 344245
Number of successful extensions: 1144
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -