Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00110
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.14 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   1.7  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   3.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   3.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 474 LPVLYVKKTDYFSVNVLLCYFIHNISIFCIHVFYTHYVVGISRHLQYYVMATYDFY 641
           LP +Y   + +    + L ++   I + CI+ FY  +++  + HL   V   Y +Y
Sbjct: 209 LPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFIL-FTVHLLLLVCIYYFYY 263



 Score = 25.4 bits (53), Expect = 0.43
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +3

Query: 522 LLC--YF-IHNISIFCIHVFYTHYVVGISRHLQYY 617
           LLC  YF +H + + CI+ FY+ +++  + HL +Y
Sbjct: 196 LLCLDYFTLHLLFLPCIYYFYSAFII-FTIHLLFY 229


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +3

Query: 543 NISIFCIHVFYTH 581
           N+++FC+HV ++H
Sbjct: 8   NLALFCLHVQHSH 20


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 467 H*SLNELPTGTGCKFNHTKATLCSVF 390
           H S N +    G  F   KATLC +F
Sbjct: 335 HVSANIVHITAGNYFEINKATLCGIF 360


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 467 H*SLNELPTGTGCKFNHTKATLCSVF 390
           H S N +    G  F   KATLC +F
Sbjct: 335 HVSANIVHITAGNYFEINKATLCGIF 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,123
Number of Sequences: 336
Number of extensions: 3545
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)