Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00110
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    29   0.81 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.9  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   7.5  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 478  QSCMLKKQIILVSMFCYVILYTILVFSVYMCFTHTM*WEYLATCNTM*WQLM 633
            Q C LKK +++   +CY  L  ++++S Y      M   + A CN    Q++
Sbjct: 944  QFCYLKKLLLVHGSWCYQRLSKLILYSFYKNIALYMTQFWYAFCNAFSGQVI 995


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +3

Query: 507  FSVNVLLCYFIHNISIFCIHVFYTHYVVGISRHLQYYVMATYDFYS*KMC 656
            F++N  L YF+  +  +C  +F +     + + +Q   +AT+       C
Sbjct: 1008 FAINNSLLYFVRALLFYCSSIFISKEFYTVEQMVQVLSLATFTLLMASTC 1057


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 480 VLYVKKTDYFSVNVLLCYFIHNISIFCIHVFYTHYVVGISRHLQYYVMATYDFYS*KMCT 659
           +LY K T Y     +  YF  N++IF I+  +    V I+ +   + +A    Y+ K  T
Sbjct: 4   ILYPKPTSYLYQPFIKAYFSLNMAIFEINNSFLICAVSIALNPLLWNIAARSEYNHKTLT 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,231
Number of Sequences: 5004
Number of extensions: 55296
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)