Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00110
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical pr...    32   0.43 
AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical ...    29   4.0  
U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered averme...    28   6.9  
U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amin...    28   6.9  

>U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical
           protein R106.1 protein.
          Length = 155

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +3

Query: 384 HSKH*TERCLRMIEFTSCPCG*FIQRLMDLLPVLYVKKTDYFSVNVLLCYFIHNISIFCI 563
           H  H T   +R  +   C CG     L  +LPVL + +  +++   LLC     +S+   
Sbjct: 38  HFTHLTHCSVRERDGDQCCCGDHAPSLSAMLPVL-ISRHIFYTFLCLLCSH-SPLSLHIS 95

Query: 564 HVFYTHYVVGIS 599
             F+T  VVG+S
Sbjct: 96  SKFHTRLVVGVS 107


>AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical
           protein Y9C9A.12 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 444 G*FIQRLMDLLPVLYVKKTDYFSVNVLLCYFIHNISIFCIHVFYTHYVV 590
           G FI    D+  +L V   DY   N+L  Y   N S+F I+    H+ +
Sbjct: 234 GMFIFEETDIADILEVFNPDYDDGNILPIYLNFNNSVFLINASRFHFEI 282


>U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered
           avermectin sensitivityprotein 14, isoform b protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 671 LTDYRTHLSGIKVISCHYIVLQVAR-YSHYIV 579
           +TDY T L+     SC  +VL++ R YS+Y++
Sbjct: 227 VTDYCTSLTNTGEYSCARVVLRLRREYSYYLI 258


>U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amino
           acid receptorsubunit gbr-2B protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 671 LTDYRTHLSGIKVISCHYIVLQVAR-YSHYIV 579
           +TDY T L+     SC  +VL++ R YS+Y++
Sbjct: 227 VTDYCTSLTNTGEYSCARVVLRLRREYSYYLI 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,373
Number of Sequences: 27780
Number of extensions: 302730
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)