Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00110
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    25   0.87 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   8.1  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.1  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 468 DLLPVLYVKKTDYFSVNVLLCYFIHNISIFCIHVFYTHYVV 590
           DL P+  +  TD F   V++  F    S+F   +  + Y+V
Sbjct: 40  DLQPLFKLACTDTFMEGVIVLAFSGLFSVFSFLILVSSYIV 80


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 487 MLKKQIILVSMFCYVILYTILVF 555
           M   +I LVS++ Y+IL   LV+
Sbjct: 1   MKAAEIWLVSLYWYLILQIALVY 23


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 288 QYCNIKRCI 314
           QYC +K+CI
Sbjct: 72  QYCRLKKCI 80


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 288 QYCNIKRCI 314
           QYC +K+CI
Sbjct: 121 QYCRLKKCI 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,597
Number of Sequences: 438
Number of extensions: 4240
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)